XLOC_016115 (saga)


Basic Information

Item Value
gene id XLOC_016115
gene name saga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5480125 ~ 5505094 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031817
ATTTTGTGAAGGCTGAAGAATGGGTGAAAGGGATTGCTATAACCCTGGCTAACCTGATTAGTTGGACCATACACATCCTGGGTACAAATAGCAGCTCCACCCCACCGGTCACTGCTCTCTCTGTCCTCAAGCTGCGCAATTAGTCATCAGCAATCATCACTACAAGGTCTCTCAACAACAATGAGTCCAAAAAATGTCGTTTTCAAGAAAATTTCCAAAGACAAGTCGGTGGGTGTGTATATGGGGAAGAGAGACTTTGTTGACCGAGTGGACTCAGTAGATCCAGTGGACGGTGTCATTCTTATTGACCCTGAACAGCTGAGGGGCAAAAAAGCATATGTCACATTGTCATGCGTGTTCCGGTATGGCCGTGATGACGACGCAGAGGTGTTGGGTATCTCGTTTAGGAAAGAGATCTACATTTCCACCCGGCAGGTCTACCCCGCACTGCAGGACAAAGAGCAGTGCATTCTCACCAAAGTGCAGGAGAAACTACTGCGCAAACTGGGGGACAATGCCTACCCCTTTTTCTTTGAATTCCCTGATAACTTGCCCTGCTCAGTTGGACTGCAGCCAGCCCCAAAAGATGTCGGAAAGCACTGTGCTGTTGAGTTTGAGGTGAAAGCCTTCTGTGCTGAGAGCCAGGATGCCAAAGTTCGCAAACGGAGCTCAGTCGGTCTGATGATCCGTAAGGTCCAGTATGCCCCAGAGAAGCTCGGACCCGCTCCCAGTGTGGAGACCACCCGTGACTTCCTCATGTCTGACAAACCGCTGCATTTGGAAGCTAGCTTGGAGAAGCAGACGTACTATCACGGAGAACCCATCAACGTAAGGGTCAAAATCAATAACCAATCCAACAAAAATGTGAGGAACATCATCCTTTCCGTGGAACAAAACGCCAACGTGGTGCTGTACTGCAATGACAATTATATGAAGGTGGTGGCcacagaggattctggGCACTCTGTTGATTCTGGTGCCAAACTGGAGAAAGTCTACACTTTGCTACCCCTGCTGGCCAATAACAGAGAACGCCGAGGAATTGCGCTGGATGGAAAATTAAAGCATGAAGATACTAATCTAGCCTCTTCCAGCATCATTAAAGAAGGCGTTCAGAAGGAAGTTCTGGGAATCATGGTGTcttacagagttgttgtgaagcttaTTGTTGGAGGCATGATGGGATCCagTGAGGTCGGAGTGGAACTTCCTTTTCAACTTATGCACCCAAAGCCTGACGCAGTGAAGGAAAGTGAAGCGGAAGAAGAAATGGTATTTGAGGAGTTCAAGCGCACCTACCTGAAGGGCATGCCTGAGGACGAGGATGAAGGAAATGCGAACATTGAGGAGAACGTGTAGAAGATCTCGAAGCATCGCTCGATATAGTAAAGTACATAATTAGGGATGTTAAAAATCATATAGAGAACACTGCGAAAGAGCACTTCTcggttacactgaaaaaaaaattattcattggatatGTTAAAAAGTTTTAAGGTAATTGGTTGGAAACTATTTATgtaggctgaatttaaataaattaagtcagtggttctcaaacttttttcaccaagtaccttagaaaaaaattgtctctccaagtaccactaacatgagcagtattgaaatacagtagcgtagtaggcccagtaaagcagctacaactcagtaaaataaaaaataaaaaacgtggcagattacctcagaaatataggctatatgtccaacccaagctcattctggaaacgtagccccgcggacgtttctggagaccgcgatttacgtggccggaggtccGTAAAGGCCgggtttggtttttttcgagcgaacgctgcagggcggtgtggcgccgctccacccctcctcttcgcgctcgccggccgacgcaatcagtttgtccgcctagctcacagcgttgcgtcggcggagaccccggaggaggaggagccggagccggccgcggtggacgacgaccgggattgagtccggggaacagcgggttccggaaatcaggtaagacgaaaaacggaattcggaaaataagggcgagaacgcggcgggatccgaaaacgtggtccgcagggctacgtttccacaatgagcccgggttgtatatgtcatatatggcatattatatatcatcatttttgataaattttgaaatgtgtttagcatgtacatgacatatttcattcctccgcgtaccactaaaaggaagcctgtgtaccactagtggtccacgcaccacagtttgagaaccactgaattaagttgaacattgtggtggctcagtggttagcactgtcaccttacagcaagaaggtcgctggttcgagtctctgctgggccagttggcatttctctgtggagtttgcatgttttccccatgttcatgtgggtttcctccgggtcctccggtttcccccacagtccagtgacatgcgctataggggaattggatgaactaaattggctgtagtgtatatgtgtgaatgagagtgtatgggtgtttcccagtactgggttgcggctggaagtgcatccgctgtgtaaaacatatgctggaatagttggcggttcattctgctgtggcgacccctgataaataagggactaagccgaaggaaaattaatgaattaaagttgaacattattaaatgtaatttgtttaaattcagcccatataaacagTTTGCAACTACATACCTTAAagacatttagtaaatccaatgaatcacttttttcagtgtatttgctGATTGTAGTTGCAATTAGAGATGAATAGAGATACTCCATCAATCATTCTTCAGCTGTCTGATCTCTGTGGAAGTGGGAcctgtaatttaaaattaatagaGAGCTGTTTCTCCTATTATATACAGATACAGAAGCTGCAAAATGCATATCTAAGTAGTTGTAAAACTTTGTGATATGAAGCAAGAACctttattgtaataaatgtattattatgaaACACTGTATTGTTATAAAATACTGAATTGTAGTGGAGTGTTCAATGATTAAAGCATGATGAAGGAGGAGGAACGAAAGAGGTctctttttgttgttatttaggatttttggtaacacttaataattacacactatgaaccattaaGCGTTAGCAAATAGTGAAATCATGATCTGTTAATcaataactctacattaataaatgttagtaagcagtttataactgcagctacaaaaactgtattcttgacttacaaacttattcataatgtgcttaatacttgtacttttgtactttatttatttttcattactaaatgaagtattgcattatttgcaAACCATTTATTTAGTTGgatgtttttaagatcattcaaaatgagttagtaaatgattaataaactattcaaatgaa
>TCONS_00031818
ATGAGTCCAAAAAATGTCGTTTTCAAGAAAATTTCCAAAGACAAGTCGGTGGGTGTGTATATGGGGAAGAGAGACTTTGTTGACCGAGTGGACTCAGTAGATCCAGTGGACGGTGTCATTCTTATTGACCCTGAACAGCTGAGGGGCAAAAAAGCATATGTCACATTGTCATGCGTGTTCCGGTATGGCCGTGATGACGACGCAGAGGTGTTGGGTATCTCGTTTAGGAAAGAGATCTACATTTCCACCCGGCAGGTCTACCCCGCACTGCAGGACAAAGAGCAGTGCATTCTCACCAAAGTGCAGGAGAAACTACTGCGCAAACTGGGGGACAATGCCTACCCCTTTTTCTTTGAATTCCCTGATAACTTGCCCTGCTCAGTTGGACTGCAGCCAGCCCCAAAAGATGTCGGAAAGCACTGTGCTGTTGAGTTTGAGGTGAAAGCCTTCTGTGCTGAGAGCCAGGATGCCAAAGTTCGCAAACGGAGCTCAGTCGGTCTGATGATCCGTAAGGTCCAGTATGCCCCAGAGAAGCTCGGACCCGCTCCCAGTGTGGAGACCACCCGTGACTTCCTCATGTCTGACAAACCGCTGCATTTGGAAGCTAGCTTGGAGAAGCAGACGTACTATCACGGAGAACCCATCAACGTAAGGGTCAAAATCAATAACCAATCCAACAAAAATGTGAGGAACATCATCCTTTCCGTGGAACAAAACGCCAACGTGGTGCTGTACTGCAATGACAATTATATGAAGGTGGTGGCcacagaggattctggGCACTCTGTTGATTCTGGTGCCAAACTGGAGAAAGTCTACACTTTGCTACCCCTGCTGGCCAATAACAGAGAACGCCGAGGAATTGCGCTGGATGGAAAATTAAAGCATGAAGATACTAATCTAGCCTCTTCCAGCATCATTAAAGAAGGCGTTCAGAAGGAAGTTCTGGGAATCATGGTGTcttacagagttgttgtgaagcttaTTGTTGGAGGCATGATGGGATCCagTGAGGTCGGAGTGGAACTTCCTTTTCAACTTATGCACCCAAAGCCTGACGCAGTGAAGGAAAGTGAAGCGGAAGAAGAAATGGTATTTGAGGAGTTCAAGCGCACCTACCTGAAGGGCATGCCTGAGGACGAGGATGAAGGAAATGCGAACATTGAGGAGAACGTGTAG

Function

symbol description
saga Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

GO:

id name namespace
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko02042 Bacterial toxins

ZFIN:

id description
ZDB-GENE-040426-1538 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

Ensembl:

ensembl_id ENSDARG00000012610

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031817 False 3385 mRNA 0.43 16 5480125 5505094
TCONS_00031818 True 1179 mRNA 0.49 15 5482151 5502256

Neighbor

gene id symbol gene type direction distance location
XLOC_016114 proca coding downstream 4204 5456541 ~ 5475921 (-)
XLOC_016113 NA coding downstream 26603 5449781 ~ 5453522 (-)
XLOC_016112 wdr33 coding downstream 36380 5410432 ~ 5443745 (-)
XLOC_016111 si:ch1073-184j22.2 coding downstream 75659 5397064 ~ 5404466 (-)
XLOC_016110 MFN1 coding downstream 123439 5338759 ~ 5356686 (-)
XLOC_016116 cldn15la coding upstream 3448 5508542 ~ 5517438 (-)
XLOC_016117 parla coding upstream 38807 5543901 ~ 5561019 (-)
XLOC_016118 NA coding upstream 196004 5701098 ~ 5702648 (-)
XLOC_016119 cwc25 coding upstream 204330 5709424 ~ 5723786 (-)
XLOC_016120 sst2 coding upstream 221259 5726353 ~ 5728895 (-)
XLOC_016105 CU929154.1 non-coding downstream 665853 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 909022 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1361310 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 1959959 3519583 ~ 3520166 (-)
XLOC_016123 NA non-coding upstream 333802 5838896 ~ 5840494 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1261199 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1370657 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1403568 6908662 ~ 6908681 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_00355244_00360638 SAGA coding CI01000003 null 355244 ~ 360793 (+)