XLOC_016118


Basic Information

Item Value
gene id XLOC_016118
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5701098 ~ 5702648 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033349
TTCAGAGAGACTCAACAGGACTGAAGAAATATGCTTCTCTTTACTCTGGTCCTCGCATCTCTACTCCTGCCTGGAGGCGCATCTGACAAACCAGCGCACAATAAAGCGATGGAGACCTCAGATATACAGGACATACAGGACTATCTTGAAAGTTACATCCCGAGACTTTCAGTACTGCTCTCCAATCTAAAGGACGTCGAGCTGGACGATAACATGGCCTTCAGAGGAGCTTTACAAGACCGACAGAGTCCAGTGAAAAGACAAGAGAACGCAGCTGATGGACTTTCAAATAAAGCTCCTAAATTATGCCTCTACTGGAAAACATGGGCCTCTTGTGTTTAAGCTAATGGCTGTTTGTTGTAGTGTAGTATTTCATCTGCTTATTGTAACATTGCAAATAAATACCAAATATAATAGTTTCAATGAAGACATAAGAGAAAGCAAgacacttttgttattttatgaataaaaaaagcttgatgtaatgtgtatttatttagtgcATGTATCGTGTAtggcaggggtgtctaaactcggtcctgga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033349 True 544 lncRNA 0.41 2 5701098 5702648

Neighbor

gene id symbol gene type direction distance location
XLOC_016117 parla coding downstream 140079 5543901 ~ 5561019 (-)
XLOC_016116 cldn15la coding downstream 183660 5508542 ~ 5517438 (-)
XLOC_016115 saga coding downstream 196004 5480125 ~ 5505094 (-)
XLOC_016114 proca coding downstream 225177 5456541 ~ 5475921 (-)
XLOC_016113 NA coding downstream 247576 5449781 ~ 5453522 (-)
XLOC_016119 cwc25 coding upstream 6776 5709424 ~ 5723786 (-)
XLOC_016120 sst2 coding upstream 23705 5726353 ~ 5728895 (-)
XLOC_016121 nyap2b coding upstream 32222 5734870 ~ 5776030 (-)
XLOC_016122 mier1b coding upstream 108834 5811482 ~ 5836116 (-)
XLOC_016123 NA coding upstream 136248 5838896 ~ 5840494 (-)
XLOC_016105 CU929154.1 non-coding downstream 886826 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1129995 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1582283 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 2180932 3519583 ~ 3520166 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1063645 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1173103 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1206014 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 1377654 7080302 ~ 7080925 (-)

Expression


Co-expression Network