XLOC_016119 (cwc25)


Basic Information

Item Value
gene id XLOC_016119
gene name cwc25
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5709424 ~ 5723786 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031824
GTTCAGTGGCTGCTGGTCTTAAACTGCTGCTGAGAGGTTGCTTCTGGATATCCCAATACTGATCATTTTCCTCCCAAACCCCACTGgagtttttcagttttttattatgtGGCTTAAAAAAGGGCAGCACATACTAGTCGTCAacaagacttttattttacaactGCGTTAAACCGGAAAAACGTCCTTGCTTCGTTCCACAACAAACATGGAAGTTTAAACGCACATCATCAAGATTGcgtgtttaaatatatattaaaacctTGCGTCATTGTTAGTACAGTGTCGATAACATGGGAGGTGGTGACCTTAACTTGAAGAAAAGCTGGCATCCGCAGACTCTGAAAAACATCGAGCGAGTGTGGAAAGCGGAGCAGAAGCATGAAGCAGAGAGGAAGAAGATCGAGGAGCTGCAGAAGGAGCTGAAAGAGGAGCGGGCCCGAGAAGAGATCACCAGATTTGCGCAAGAGACTGGCGCTGTAAAGAAGAAAGATGACCGTTTGGACTGGATGTACCAGGGTCCATCGGGACAGATCTCTCGGGAGGAATACCTTCTGGGTCGCCCCATTGACAAGCAGATCACCCAGCAATATGAGGACCAGGAGAGCGGCCCATCCGCTGAGACTGGGCTCCTGCCTGGGTCCATATTTAACCCCTCCAGTGCTGCCTCCACCAATGATATGGCTGCCAAAATCAGAGAAGACCCTCTTTTTGAGATCCGCAAACGTGAGGAGGAGAAGAAAAGAGGAGTTCTTACAAATCCTGTCAAAATGAAAGAAATCCAGAAGATGTTGCGTCAAAATCTGGAAaaggagaaaaagaagaaaaggaaaaaggaaaagaaagagaaaaaagagaaGAGGAAGGACAAAGAGCACAGGAGGAGGAGTTCGAGCTCTGAGGACGAGCGCAGGAAGCATAGGTCAAGGGAGGAAAAATCAGATGTCACAACCTCTAATGGACATCACAGATCTGGCTATGGACTTCAATTACCAGCACACAGGTCCACTCACTCATCAGCGTCCAACCACACAGATCACCGCTCAAGAGACAGAAGTCGATCCCCGTTGTCTCACAAAGCAGACCGGGACAATCACTCCTCTCGAGAGTCGGAGCGGAAAGCTAAACCCAAAGCCCCCAGTCCACCGAGACACAGAGACCGCTATCAACGGCCACAGTACACCAATTACAGCAAGCGTCTCTCCGCTGAAGAGTTGGAGAAGAAGAGAAGGGAAATGATGGATTTTGCCCGTGAAAGAGAAGTGGAAAGGGAAAATAATGTGCAGAGATACAAGCGTCAAGAGGAGCAGGAGAAAGCCAGAGAGGATGCCAAACAGGACCGTCATGCTGGCTTCATACATGAGATGAAGCTGGAGAGCGCTGCCACATCTTCTCTGGAGGACCGCGTGAAGAGGAACATTCACTCCATCCAGAGGACGCCTGCTGCGCTGGAGAAGAACTTCATGAGAAGATGAGAACACCACACCACCCATGCACACCTCCCTCTGTAACTTTTaggatgtgttttattaaaggCCGCTGTATTTGTGATCTTTGTGCTTGTAAATGAAATGGCCAGATGACACTTGACCTCCTCAATTTTCTTAAATGACCATCTCCAGGGACTCTCCCATTCATATCCTTTCTCTGGACAACCAACATAGAAATGTATGTATAAAGATGCTTGTTTACCATATGCGGAttagatatctttttttttctctcacattTTTGGATACATTTTTGATGATTTCTGATTTAACCCTTTGAGCTAGCTggtcattttgtattttgttccCCCACTCTTCCGCACATGTTACATATTTTGGTAATCCTGTAAAATTTAGATGTTGTGTAAAGGGTTAAAAAATTAATTCTgtgaaaagacatttttaaattgGACGTCGTGTTGCCATGGAAATAAATCTTTTAGTGAA

Function

symbol description
cwc25 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type spliceosomal complex. Orthologous to human CWC25 (CWC25 spliceosome associated protein homolog).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005684 U2-type spliceosomal complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2817 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type spliceosomal complex. Orthologous to human CWC25 (CWC25 spliceosome associated protein homolog).

Ensembl:

ensembl_id ENSDARG00000003382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031824 True 1937 mRNA 0.45 9 5709424 5723786

Neighbor

gene id symbol gene type direction distance location
XLOC_016118 NA coding downstream 6776 5701098 ~ 5702648 (-)
XLOC_016117 parla coding downstream 148405 5543901 ~ 5561019 (-)
XLOC_016116 cldn15la coding downstream 191986 5508542 ~ 5517438 (-)
XLOC_016115 saga coding downstream 204330 5480125 ~ 5505094 (-)
XLOC_016114 proca coding downstream 233503 5456541 ~ 5475921 (-)
XLOC_016120 sst2 coding upstream 2567 5726353 ~ 5728895 (-)
XLOC_016121 nyap2b coding upstream 11084 5734870 ~ 5776030 (-)
XLOC_016122 mier1b coding upstream 87696 5811482 ~ 5836116 (-)
XLOC_016123 NA coding upstream 115110 5838896 ~ 5840494 (-)
XLOC_016124 tmem125b coding upstream 210116 5933902 ~ 5942355 (-)
XLOC_016113 NA non-coding downstream 255902 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 895152 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1138321 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1590609 4114011 ~ 4118815 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1042507 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1151965 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1184876 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 1356516 7080302 ~ 7080925 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G341697 NA unknown CI01000128 null 34930 ~ 58071 (-)