XLOC_016122 (mier1b)


Basic Information

Item Value
gene id XLOC_016122
gene name mier1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5811482 ~ 5836116 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031827
AATATGGCGGAGCCCTCTTTGGGGAGTTCAAGCCCAGAGATGCTGTTGCCTGATTATGATGACGATCAGACCCCTGAAGACGAGGAGGTTCCAGAGGGAGACGCTAATTTCGGCAAAGAGATCGAAGAACTTGCTAAGGAGGGAGAAATGCCCATTCAGGAGCTGTTAAGTCTTTATGGGTATGGAGGCAGTGGATCGCCGGACGAAGATGAGGAGGATGAAGACGAAGATGAGGACggagatgaagaggaggaggaggaagaggaggaggaggaggaagatgaagCGGAGGATATGGATAACGATGACAGCAGCAGAAGCACCGGAGATCTGAAAAAGAGACAGGAGGATGGAGCAAAAGTTTCCACAGGAATAGTGAAGGAGAGTCACTCAACTGACAGTCGAGCTTGTGCGGTAAAGGCCTGCAACAAAGCTGAACTCATACGAACCAAGAACCACGGCTATTTTCAGAatAATGAAGTAGATGAAGAGTCGGAGGAGGATGATGACTATATTCCTTCTGAAGACTGGAAGAAAGAGATCATGGTCGGGTCCATGTATCAGGCTGAAACACCATCTGGACTGTGCAAATACAAAGAGAATGAAAAAGTTTATGAAAATGATGATCAGCTGCTGTGGAATCCTCAAATGCTCCCTGAAAACACCGTGGTTGAGTTTCTGACAGACGCCTGTCGACGGACCGGAGAGGAGACGGGTGTAGATGCGATTCCAGAAGGATCCCACATTAAGGACAATGAACAGGCGCTGTATGAGCTGGTGAAATGTAATTTTGAAACCGACGAAGCTTTACGAAGGTTAAGGTTTAACGTTAAAGCAGCCCGAGAGGAGCTATCTGTGTGGACGGAGGAAGAATGCAGGAATTTCGAACAAGGTTTAAAGGCTTACGGAAAAGACTTTCATTTTATCCAAGCCAATAAGGTCAGAACACGGTCTGTTGGAGATTGTGTGGCTTTTTATTACATGTGGAAGAAGTCGGAGCGATATGACTTCTTTGCTCAACAAACTAGGCTTGGAAAAAGGAAGTACAACCTTCATCCGGGAGTAACGGACTACATGGACAGACTTCTAGATGAGACAGAAAGCACTGCGTCCAGTCGAGCAGCCACTCCACTACCTGCAGCCTCCAGCAGCAGCACCACCAGCCAATCAGAGCGAGAGGAGACGAGCGGACACAACGGTCTCAGCAGTCACAGCTCCAGTGCAGACGGCATACAGACATTGAGCAGCGACAACGAAGTAAAGATCGAATCTGTCCAGGCCAACGGAGCACCTAAACACCTTCTACACACAGATCACACGGACTCCAACGGTGTCAAACTAACCGAAATCCACAACACAAATAGAAATGGTGCAGTAAAGCACCAACTTGACTGCCAGAGCCTCGAAAGGCCAGCAAAAAAGTGCCGGACAGAATCAGACTCACTGGCCCAAGTTGAGACGGACCCGTCCAGGCTTAAAGAAGACtgagcaacaaaacaaaacaaaagccagacCAAAATCAGAAAGCGTGGGAGTGGGACACCTTTCGACTCGATATCCAAAGCTGAGCTgctccaaaaaacaaaataaaacacaccaCCTTTCAATCCCGAACTACAGCTGAATAACACGCCTTTTTCACGAACACCATTTTACAGAGAAATGTTTATTCTATATGTAATGGATATTTTTTTACCAACgagatatttatattttttattgagaCGTTTTTGACAATGGGTAGATATGCTGTGTAAGCCTTTATACATAATGTGCGAGTGCTGGTGTGGTTTGGCCatgaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtctgtccagGTACATCAAGCCGTGTTTTAGTTTATATTCTAAGCTAATGGTTAGCTTGTTTGTGTTAGCGGAGGGAGGCGTACTGAAAGCAGAtatagtcaaaaataaataagccAATGGAATCACTCCTTATTAATTTACACTTATTTTATGGCTAAGTGTCCAGAAACTCAGTTTGCTAGTTTtgatctattgtttttttttttttgcgtaaagAAAATGAGGCCAGTTTTTGTGAATTATTATTTAGCGTAGACATTTTCTCATTGATTCTTGTAATTGTTACCCGAACTGAATACAGCCTTAAACAAGACTATGAGaactccctactgaaaaaaacagcctaggctggttgactggtgttagctggttgaccagctaggttttagaggggttttggccatttccaagctggtttccaaccatttccagcctggtcttagctagtcagaCTGGAAAATGACTGGCTAAACTTAGCTAAAACcaatttgaccagcctggtttaagctggacatagctggttttggctgggctggtcaagctagttatctcccagcctgaccaggctaaaatggctgtaaaccagcctggaaatgaccaaaaccagcctgaaaatggccaaaacccctcttaaaccaaaactggtcaaccagctaaaaccagccaacctgcCTAgactggttgactggttttagctggttgaccggTTTTAGCTGGTTGTCCAGCttgattttagaggggttttggccatttccagcctggtcttagctggtcagactggaaaatgaccagctaaatttCACTAAAACCATCttgactagcctggtttaagctgaacatATCTGattttggctaggctggtcaagttggttttagctggtcatctcccagccttaccagctaagaccaggctggaaaccagcctggaaatggccaaaaccaaaactggtcaaccagctaaaaacAGCCAACCAACCTAGGGTGGTCTAAGCTGTTTTTCTTTTAGTAGTGATGAAATGGAAATGCTTTACTATGTTCGTATTATTGGAGTATATAgataaaatgtgtgtaaaagtCCTAAATATAGTCCTAATTTGGCTTCATTATCTTTTAGCAAATATAAAATtgcaatgttattatttatttttagagaaagaaaatggACGCCTGTTTGTTGGCTTTTGTCTTGCATTGTATACATTTCTTACAGATCTTGGTTTAGATTTTCACCTCAGAAATACCTTATTTTACAATTCTTGCAATTAAGGAAACTTAGAGCCAACAAAATATAATAGAATCGACACCGACAGTGAAATTAAGACATGTTTCAGTGTAATTCAAGTAGGGTTAATCTTGCGAATATGTCCTTGAAATGCATGAAGATCCCAGAGGAACGTATTGAATGTCTTTCATAAACAGTTAATTTGTAAAACTTAagcatttatttcttcttttaatcTCCGTTTATAATGTCAGTCAGCTGAGTTTAATAAGTTGTACTTTCTTAGATAGACCAATTTTAATACAATGAAACACACAAATGAATTTGTTGCCACAGGTATGTCCTTAAATATCTAATTGTACgcattatattttcatattttattggcAGGATGCTCTTTTGACTGTAATTCACCTCCAGTACTTCATTATAAACAAGACTCACCTCATTCTGTGGATAAACCCCCTCCTCATTAATACTTTAATGAAATCATGGTGCTATATTTCCTCTGAATGCTCGTCTTCATTGgcttatttattgttatttgtgtTGTTTGTCCTCATTGTAGTTCGGTTTTCTTCATGTATGTGACTGTAGCATTCATCTTAAAATGGTTGGAGTGGGTTGTATGCGCTCATTCTGGCCAGaaagtatacattaaaaacatttaaatagagAA

Function

symbol description
mier1b Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Orthologous to human MIER1 (MIER1 transcriptional regulator).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0017053 transcription repressor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-170 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Orthologous to human MIER1 (MIER1 transcriptional regulator).

Ensembl:

ensembl_id ENSDARG00000001447

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031827 True 3766 mRNA 0.42 13 5811482 5836116

Neighbor

gene id symbol gene type direction distance location
XLOC_016121 nyap2b coding downstream 35452 5734870 ~ 5776030 (-)
XLOC_016120 sst2 coding downstream 82587 5726353 ~ 5728895 (-)
XLOC_016119 cwc25 coding downstream 87696 5709424 ~ 5723786 (-)
XLOC_016118 NA coding downstream 108834 5701098 ~ 5702648 (-)
XLOC_016117 parla coding downstream 250463 5543901 ~ 5561019 (-)
XLOC_016123 NA coding upstream 2780 5838896 ~ 5840494 (-)
XLOC_016124 tmem125b coding upstream 97786 5933902 ~ 5942355 (-)
XLOC_016125 scp2a coding upstream 169083 6005199 ~ 6039757 (-)
XLOC_016126 czib coding upstream 205923 6042039 ~ 6051836 (-)
XLOC_016127 uck2b coding upstream 215800 6051916 ~ 6065416 (-)
XLOC_016113 NA non-coding downstream 357960 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 997210 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1240379 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1692667 4114011 ~ 4118815 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 930177 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1039635 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1072546 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 1244186 7080302 ~ 7080925 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000128_00337936_00340863 MIER1B coding CI01000128 null 337911 ~ 340863 (-)