XLOC_016123


Basic Information

Item Value
gene id XLOC_016123
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5838896 ~ 5840494 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031828
AAAGTGGGCATGTGTGATCCAGCACGTTTGCATTCGCAGTGATTTGTCAGAGAAGTCTCTGGGATGGATATGATTTACACGCTTCTTTGCGGACTGCTCGTGGTCAGTCTGTCACTTTACGCAAAACCCTTCACCACAGTCCAGTACAAGTCCACGAAAACTCTCCCCGCAGCAGAGAGCAGGAGCGCGCTCAACAGGTCGCGCGCAGCCAAAGAGCCTCCAGATCTGGACGCGAAAACCGGCGCAAAACAGCGGCCGTCATCCGGTGATCAGTCACGCAAAAAACAGCCTCCCAAAAACAGAGACAAACGGAAAAACTGCTTCGGCTTAAAGATGGATAGAATAAGCGATGTGAGCGGAATGGGCTGCAAAAGTGACTGAGCGACATATGGGAGGTTATTCATGCTGAGTAAAAAGGACTAAATGTGTCTCATGCAGAATGAACATGAATCAGGAATGCTTAGTCAGTGGTGCTTTTGGATTGCAACAGTTTGCAATATTTGGATACATGTTGTTGGATCACTCCCTTACTGTTGTTAAATTGCATTTTGAATTTTAGCAAACGAGCATAaacttaaaacaacatttaattctCTTGCATCAGTGTCGATCAAACTGCGACAGGAATAACTCATAAGTGATTTGTGCCTTGGTCAATGTTGGGTTTGTGTTGAAACTGCATGTTTAAGACTTTGTCTATGTTCTTGTAAAAGAAAACAGTATTGAGACTACTCTATGTTACACTGAGAACGAGTTATGTACAGAGATGTATAATAAacttatagttttttattattcatttcccTTCTCCTTTAGttgcaaaacattgtttttatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031828 True 837 lncRNA 0.42 2 5838896 5840494

Neighbor

gene id symbol gene type direction distance location
XLOC_016122 mier1b coding downstream 2780 5811482 ~ 5836116 (-)
XLOC_016121 nyap2b coding downstream 62866 5734870 ~ 5776030 (-)
XLOC_016120 sst2 coding downstream 110001 5726353 ~ 5728895 (-)
XLOC_016119 cwc25 coding downstream 115110 5709424 ~ 5723786 (-)
XLOC_016118 NA coding downstream 136248 5701098 ~ 5702648 (-)
XLOC_016124 tmem125b coding upstream 93408 5933902 ~ 5942355 (-)
XLOC_016125 scp2a coding upstream 164705 6005199 ~ 6039757 (-)
XLOC_016126 czib coding upstream 201545 6042039 ~ 6051836 (-)
XLOC_016127 uck2b coding upstream 211422 6051916 ~ 6065416 (-)
XLOC_016128 zte38 coding upstream 251564 6092058 ~ 6104035 (-)
XLOC_016113 NA non-coding downstream 385374 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 1024624 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1267793 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1720081 4114011 ~ 4118815 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 925799 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1035257 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1068168 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 1239808 7080302 ~ 7080925 (-)
XLOC_016146 NA non-coding upstream 1561997 7402491 ~ 7431590 (-)

Expression


Co-expression Network