XLOC_016127 (uck2b)


Basic Information

Item Value
gene id XLOC_016127
gene name uck2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6051916 ~ 6065416 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031836
TCTGGATACGAGCAGAGTGTGGGACACAGGAGGaggagcggtgtgtgtgtgtattattagaATAGCGACACACACACTTGTGATTCCACACTGCAAGCATGGCTGGCGACAGTGAAACACATCTTAAGGACAGAGCGGAAAACGGCCACGCCGTCCGACAGCCTTTCCTCATCGGTGTGTCCGGAGGCACCGCCAGTGGGAAGTCTTCAGTATGTGAGAAGATCATGGAGCTGCTGGGCCAGAATAAGATTGACCGGCATCAGCGTCAGGTGGTGATTCTCAGTCAGGACAGCTTTTACAGGGAGCTCACGCCCGAACAGAAGGCCAAAGCAGTCAAGGGCCAGTTCAACTTCGATCATCCAGATGCTTTCGACAGTGAGCTGATCATGAAGACTCTGCGTGACATCATTCAGGGGAAAACCGTGCACATCCCAGTGTATGACTTCGTTACCCATTCCAGGAAGGATGAGTTTTTGACGTTGTATCCAGCAGATGTGGTTCTGTTTGAGGGGATTCTCATGTTCTACTCGCAGGAGATTCGGGATCTGTTCAAGATGAAGCTGTTTGTGGACACAGACCCAGACACACGCCTCTCACGGAGAGTGTTACGGGACATTAGTGAGAGAGGGCGAGAGTTGGAGCAGGTTCTGAACCAGTACATCACCTTTGTGAAGCCAGCCTTCGAGGAGTTCTGCCTTCCTACTAAAAAGTATGCAGATGTCATCATCCCCCGAGGCGCAGACAATCTTGTGGCTATTAATCTGATCGTGCAGCATATTCAGGACATCCTGAACGGTGGTTTCACCAAACGGCAGAACGGTTTCCAGAATGGCCACGGGACGCCCAGACAAAGACGGACGTCTGAGTCCAGCAGACCTCACTGACACCACTACAGCCTTCCCTCCATTGAGGAGAGGGCAGAACTCAATAATACCAGCAGAGCATCCCGTTTATCCTGTGAGAATGAGGGATGCTGCAGCTGACTTGCCTTTGTTATTGTTACCGTTATTTTGCATTTGAAATGTTGTCATGGATGATTGTTTGCTTTTACAGTTCTTTTTCCCTAAGGGTTTTGATGGTGCTGTATGTTTTTGGAaggttttgattgattgattcgaCCTGCGCTGTCAGCTTTCTCATCTACTCCGAAAATAAACAAATTGTATGAAAAGTCAGACTGGAAGCGGAGTAAACGTGATCACAGTGCTTTCAGCACACTTACTTGAAGTCAGAGCTCAGGTCGGGTGGATTATTTCATCCACAAAGTAGATATAAACCCTAGTTACCTCATATTTGAGGCCaattttttagtgtgtgtgtgtgagagagagtgaatCATGTAATTAAGATGACAATATGGTACACACGTTTTTATATTGTCACTAATTTGACCTTATTTGAGTAGATTTCTAGTGAaatcttgttttttgttattacaaTTGTAGTGTTTTGTACGTATGACGTGACAACATTGTGTACTTTATTAGCAGGGTTTTCTGAACACACTATCACAATAGTCAAGTATAGTTTTAGCCAGATAGTATTGCCTAAACCACAATGACTCAAATCAGGGATTATGGTCAAAtatgtttcttattttaaaacacaaaatacctCAACAGCATTTATTGTTAACTTTAAGTACGTGAAGTGTACTCTGTTCAGTAACCCAGGGCACTACTTTAAAACGCCTGTGTTTACTTCCCCCCCCCTCACGCCTCTGTGGCtggtatttttatgtaaaattctCCCTCGGATGGTTTTTTTTTAACGTATGATCCATTGCGTagtggtgaaataaaataaaatcataaaaactaAA

Function

symbol description
uck2b Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK2 (uridine-cytidine kinase 2).

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004849 uridine kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0019206 nucleoside kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5265 Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK2 (uridine-cytidine kinase 2).

Ensembl:

ensembl_id ENSDARG00000022213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031836 True 1822 mRNA 0.44 7 6051916 6065416

Neighbor

gene id symbol gene type direction distance location
XLOC_016126 czib coding downstream 80 6042039 ~ 6051836 (-)
XLOC_016125 scp2a coding downstream 12159 6005199 ~ 6039757 (-)
XLOC_016124 tmem125b coding downstream 109561 5933902 ~ 5942355 (-)
XLOC_016123 NA coding downstream 211422 5838896 ~ 5840494 (-)
XLOC_016122 mier1b coding downstream 215800 5811482 ~ 5836116 (-)
XLOC_016128 zte38 coding upstream 26642 6092058 ~ 6104035 (-)
XLOC_016129 prdx1 coding upstream 38962 6104378 ~ 6115688 (-)
XLOC_016130 IPO13 coding upstream 85439 6150855 ~ 6182098 (-)
XLOC_016131 rec8a coding upstream 146789 6212205 ~ 6232517 (-)
XLOC_016132 arl14 coding upstream 195997 6261413 ~ 6262441 (-)
XLOC_016118 NA non-coding downstream 349268 5701098 ~ 5702648 (-)
XLOC_016113 NA non-coding downstream 598394 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 1237644 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1480813 4571013 ~ 4571103 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 700877 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 810335 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 843246 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 1014886 7080302 ~ 7080925 (-)
XLOC_016146 NA non-coding upstream 1337075 7402491 ~ 7431590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01321057_01329157 UCK2A, UCK2B, UCK2 coding CI01000004 null 1321057 ~ 1329157 (+)