XLOC_016129 (prdx1)


Basic Information

Item Value
gene id XLOC_016129
gene name prdx1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6104378 ~ 6115688 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031838
AAAATGGCAGCTGGAAATGCACACATTGGGAAACCTGCTCCGGATTTCACAGCCAAAGCAGTGATGCCTGATGGACAGTTTGGAGATGTCCGTTTGTCTGACTACAAAGGGAAGTATGTGGTGCTGTTCTTCTATCCACTGGATTTCACCTTTGTCTGTCCCACTGAGATCATCGCCTTCAGTGATGCTGCCGAGGAGTTCAGGAAAATCAACTGCGAGATCATTGGTGCTTCTGTCGATTCCCACTTCTGCCATCTTGCCTGGACCAAAACACCCCGAAAACAAGGTGGTTTAGGACCAATGAATGTCCCTCTGGTGGCAGATACTCTCCGCTCCATTTCTAAAGACTACGGTGTACTTAAAGAAGATGAGGGTATTGCATACAGGGGTCTTTTCATTATTGACGACAAGGGCATTCTGCGGCAGATTACCATCAACGATCTGCCAGTCGGTCGCTCCATTGATGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGATAAGCATGGAGAAGtttgtcCAGCCGGATGGAAGCCTGGAAAAGACACTATTAAGCCCGATGTCAATCAGAGCAAAGACTTCTTCTCCAagcaaaattaaaactaaaaaaggCACTAGACTCTGCAGCATAGTATAATAGACAGAAGTGATGTGAATTAATGCTACTGGTTGGACTAGTACATCCATTTACAGGTGGTTATTCTTATTATATAGTGTTATATATTGTAAAGTTGTAGGACTAAAGTGTGTCAGACTACCTGAAATGTATTGAACCGTTTGAGTTGGTTTGTTCAACTTTGTCTTACCATTTAGTTTTGTGTGAAAAGAGATGTTTTATAGCGATGACCTTCTGACTACACTGTCAACAATTGCATTTCAAATAATAAACTCGTATTTTGTAAAAgctttattagtttatttgttaCCACTGTTtgatttgtaaacatttataaatcttcAGTGCTACATGTTTTTCTTGGTCTGTTGTTATCGGATGTGTTAAGAGTGtcgtaaagtaacaaattacaaacactctgtactactgtaattgagtagtttttttttctcagaaattgtagtttactaaagtagttttaatgtgtacttttactttcccttgagtacatttttaatgcagtATCGGTAAGTTTACTCCACCACTGTCCTTCATCCTGCAGTCATTACTTTATTTtctcttgtctatggggattagaagtCCAGTGactcctgtccaatcaaatcacacagaaggcaaatcgcatcataatgagctacctcaagacatgagcgCTTTATAATTGcaacaaactgtttggaagcattagaAGTGTCCAAAAAGGTGTTCTTCACACACATTAACCCAGAGACTATTTGGATGCATggcactgatgagaagatgacgaatGTTTATTGtttgaccattcattcattttctttgctgcttagtccctttttattaatttggggtcgccacagcggaatgaaccgaatgaacttatccagcatatgttttatgcagcggatgcccttccagctgcaacccatctctgggaaacatccatacacggttgtacactccggacaatttagcctgccctattcacctgtatcgcatgtgtttggactgtgggcgaaacccgagcacccagaggaaacccacaattgccaggagaacatgcaaactccacacaaacgccaattggcccagctgaggcttgaaccagtgaccttcttgctgtgaggcgacagcactacctactgtgccactgcgttgccccgtATGGTGACCCAAATGGatttaaacacccagcagacacggCGTCAACATGATGTTAGATTGGTGTTGTACCTCAACGTTGTGCGGgtgttgcattttatttggaaCTGAAAATCggtttgacgtcagaacccaacgtcaaaGTCCAACATggaacctaaaaccaaccaaataccaatgtctaatgatgttacagcttgatgttatgtggatgttaccactgtgatgtctatcagatattggattttggttgccatacctgatgaataaatctCAGTATTTGatatcaatatgatgttggtttaagattttggctctgttggattttggtcactttccaacacaaattAACATCAACCAagtatcaacatcatttgaagtttgacattattggacatcaaaataatgtacttaagacactggctagacattgaattttggtcacttgacatcacaatctaaattaacctaatattaacatcttaagacgttgtgtgcctgctgggcaataactaaaagcactacagaatgttacgcttgcacacacatccacaaattaagtaaatgcattagccttttacagcgtaatactctcTACACCTgggtacttttaaaaggtctacgttttactcatacttttgagtaatatttacaacaaatactctacttgcactacatcttTAAGCAGGTAAATGTGCTTTTACTTGATTTTTCAGTATTCTTTCTACCACTGGATGTGTTTGACCAAAATAAGCCGAACACCAGCTTTTAGTACTCTAATATCATCATGATATATCTCTTCAGCATAGAGTGATGTAAGTAGACTAGCATGCTAATATTCATGCATATGCTTATGTGTGAACCTGGGCCACTAAACCAGACAATAGCCCAAAacacattgtatgggtcaaaatcattgattttgtttttttttttttatgcttgaaataattagaatgattttttttactttttctaggGTAAATATGTCAACTTTTGGATGTAATATGTGCTTTTATGAACCTTTTACTTTCATCAGTATttgtagttttcttttttttaaccttcagattctagatttttaaaaagtcatatgTCTGTCTGCCAAATATTGTTCTAACAGTGTACACCAGTGAAAAGCTTTTTATTGAACTTTCagttgattaatttaattaattaatttccaaAAATTATGAaacatgactggttttgtggtcaagGTTCAGGTTGTGTCACTCCCAGAACCACCCCTTAGTTCAAGCATTTGAATTAGTGTGATAATTTATgtcttattttgatttattttcatatGTAAGGATGtctcattttacagtaaattaatgTTCATTTACACTGTGAGGAAATCTGACTATATTCGCA
>TCONS_00031839
AAGTCATGCTGCCATAAACACTTCTCTGTAATTTGGTCTTTCCACGGAGCATTTACTCCTCGGAGCAGCGCATCTTGCAGAGTATCGCGAGACTTGAGCACGACCTATTTAAACACCAGCCGCTGCCCGcgagttcactttcattcattcactctcgGATTGTGAAGACAGTTCAAGAAAATGGCAGCTGGAAATGCACACATTGGGAAACCTGCTCCGGATTTCACAGCCAAAGCAGTGATGCCTGATGGACAGTTTGGAGATGTCCGTTTGTCTGACTACAAAGGGAAGTATGTGGTGCTGTTCTTCTATCCACTGGATTTCACCTTTGTCTGTCCCACTGAGATCATCGCCTTCAGTGATGCTGCCGAGGAGTTCAGGAAAATCAACTGCGAGATCATTGGTGCTTCTGTCGATTCCCACTTCTGCCATCTTGCCTGGACCAAAACACCCCGAAAACAAGGTGGTTTAGGACCAATGAATGTCCCTCTGGTGGCAGATACTCTCCGCTCCATTTCTAAAGACTACGGTGTACTTAAAGAAGATGAGGGTATTGCATACAGGGGTCTTTTCATTATTGACGACAAGGGCATTCTGCGGCAGATTACCATCAACGATCTGCCAGTCGGTCGCTCCATTGATGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGATAAGCATGGAGAAGtttgtcCAGCCGGATGGAAGCCTGGAAAAGACACTATTAAGCCCGATGTCAATCAGAGCAAAGACTTCTTCTCCAagcaaaattaaaactaaaaaaggCACTAGACTCTGCAGCATAGTATAATAGACAGAAGTGATGTGAATTAATGCTACTGGTTGGACTAGTACATCCATTTACAGGTGGTTATTCTTATTATATAGTGTTATATATTGTAAAGTTGTAGGACTAAAGTGTGTCAGACTACCTGAAATGTATTGAACCGTTTGAGTTGGTTTGTTCAACTTTGTCTTACCATTTAGTTTTGTGTGAAAAGAGATGTTTTATAGCGATGACCTTCTGACTACACTGTCAACAATTGCATTTCAAATAATAAACTCGTATTTTGTAAAAgctttattagtttatttgttaCCACTGTTtgatttgtaaacatttataaatcttcAGTGCTACATGTTTTTCTTGGTCTGTTGTTATCGGATGTGTTAAGAGTGtcgtaaagtaacaaattacaaacactctgtactact
>TCONS_00031840
AGGCTGCTTTTGGAAGGAGAGTTTCATTTTTGAAAATGGCAGCTGGAAATGCACACATTGGGAAACCTGCTCCGGATTTCACAGCCAAAGCAGTGATGCCTGATGGACAGTTTGGAGATGTCCGTTTGTCTGACTACAAAGGGAAGTATGTGGTGCTGTTCTTCTATCCACTGGATTTCACCTTTGTCTGTCCCACTGAGATCATCGCCTTCAGTGATGCTGCCGAGGAGTTCAGGAAAATCAACTGCGAGATCATTGGTGCTTCTGTCGATTCCCACTTCTGCCATCTTGCCTGGACCAAAACACCCCGAAAACAAGGTGGTTTAGGACCAATGAATGTCCCTCTGGTGGCAGATACTCTCCGCTCCATTTCTAAAGACTACGGTGTACTTAAAGAAGATGAGGGTATTGCATACAGGGGTCTTTTCATTATTGACGACAAGGGCATTCTGCGGCAGATTACCATCAACGATCTGCCAGTCGGTCGCTCCATTGATGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGATAAGCATGGAGAAGtttgtcCAGCCGGATGGAAGCCTGGAAAAGACACTATTAAGCCCGATGTCAATCAGAGCAAAGACTTCTTCTCCAagcaaaattaaaactaaaaaaggCACTAGACTCTGCAGCATAGTATAATAGACAGAAGTGATGTGAATTAATGCTACTGGTTGGACTAGTACATCCATTTACAGGTGGTTATTCTTATTATATAGTGTTATATATTGTAAAGTTGTAGGACTAAAGTGTGTCAGACTACCTGAAATGTATTGAACCGTTTGAGTTGGTTTGTTCAACTTTGTCTTACCATTTAGTTTTGTGTGAAAAGAGATGTTTTATAGCGATGACCTTCTGACTACACTGTCAACAATTGCATTTCAAATAATAAACTCGTATTTT
>TCONS_00031841
CAGAAAATGGCAGCTGGAAATGCACACATTGGGAAACCTGCTCCGGATTTCACAGCCAAAGCAGTGATGCCTGATGGACAGTTTGGAGATGTCCGTTTGTCTGACTACAAAGGGAAGTATGTGGTGCTGTTCTTCTATCCACTGGATTTCACCTTTGTCTGTCCCACTGAGATCATCGCCTTCAGTGATGCTGCCGAGGAGTTCAGGAAAATCAACTGCGAGATCATTGGTGCTTCTGTCGATTCCCACTTCTGCCATCTTGCCTGGACCAAAACACCCCGAAAACAAGGTGGTTTAGGACCAATGAATGTCCCTCTGGTGGCAGATACTCTCCGCTCCATTTCTAAAGACTACGGTGTACTTAAAGAAGATGAGGGTATTGCATACAGGGGTCTTTTCATTATTGACGACAAGGGCATTCTGCGGCAGATTACCATCAACGATCTGCCAGTCGGTCGCTCCATTGATGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGATAAGCATGGAGAAGGTAACACTTTCTCATCTCTGACCTGATTCCATGTAACATTCCTTTTTCATACTGTACAGTGTCTACAATCAGAGGTAAAGGGGAAATGAATTACATACATGAGTATT

Function

symbol description
prdx1 Predicted to enable thioredoxin peroxidase activity. Acts upstream of or within leukocyte activation. Part of protein-containing complex. Is expressed in several structures, including diencephalon; digestive system; epidermis; lateral line; and otic vesicle. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human PRDX1 (peroxiredoxin 1).

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0033554 cellular response to stress biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0045321 leukocyte activation biological_process
GO:0005829 cytosol cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function
GO:0008379 thioredoxin peroxidase activity molecular_function

KEGG:

id description
ko04146 Peroxisome
ko05146 Amoebiasis
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050320-35 Predicted to enable thioredoxin peroxidase activity. Acts upstream of or within leukocyte activation. Part of protein-containing complex. Is expressed in several structures, including diencephalon; digestive system; epidermis; lateral line; and otic vesicle. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human PRDX1 (peroxiredoxin 1).

Ensembl:

ensembl_id ENSDARG00000058734

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031838 False 3160 mRNA 0.38 5 6104378 6112862
TCONS_00031839 False 1224 mRNA 0.42 6 6106491 6115688
TCONS_00031840 False 933 mRNA 0.43 6 6106637 6115389
TCONS_00031841 True 627 lncRNA 0.46 4 6107103 6112865

Neighbor

gene id symbol gene type direction distance location
XLOC_016128 zte38 coding downstream 343 6092058 ~ 6104035 (-)
XLOC_016127 uck2b coding downstream 38962 6051916 ~ 6065416 (-)
XLOC_016126 czib coding downstream 52542 6042039 ~ 6051836 (-)
XLOC_016125 scp2a coding downstream 64621 6005199 ~ 6039757 (-)
XLOC_016124 tmem125b coding downstream 162023 5933902 ~ 5942355 (-)
XLOC_016130 IPO13 coding upstream 35167 6150855 ~ 6182098 (-)
XLOC_016131 rec8a coding upstream 96517 6212205 ~ 6232517 (-)
XLOC_016132 arl14 coding upstream 145725 6261413 ~ 6262441 (-)
XLOC_016133 ppm1la coding upstream 150080 6265768 ~ 6292510 (-)
XLOC_016134 si:dkey-119f1.1 coding upstream 205935 6321623 ~ 6373829 (-)
XLOC_016123 NA non-coding downstream 263884 5838896 ~ 5840494 (-)
XLOC_016118 NA non-coding downstream 401730 5701098 ~ 5702648 (-)
XLOC_016113 NA non-coding downstream 650856 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 1290106 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1533275 4571013 ~ 4571103 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 650605 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 760063 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 792974 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 964614 7080302 ~ 7080925 (-)
XLOC_016146 NA non-coding upstream 1286803 7402491 ~ 7431590 (-)

Expression


Co-expression Network