XLOC_016131 (rec8a)


Basic Information

Item Value
gene id XLOC_016131
gene name rec8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6212205 ~ 6232517 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031843
ATTGGTTTGCCTTGCTTCGAAACCACGAGTGATTGGTagagttttaaaaacaattcCCCCTCAGCAACCTTTGAAGTGATTTCCTATTAAAAGACACGATTTTACCTCAGACATGTCTTTTCATCCGTGATCACGTCGCTGTTGCAGTTTTTTTGCTACATATTTGCTTTATTATATTGACTTTATTAACGGCTTCACAATGTTTTTCTACCCTACTGTGCTCAATCATCGGACTGGGCGATTTGCCACGATATGGTTGGCTGCCACTAAAGGACGAAAGATAAGTCGGAGAGATCTACTCAAAGTCAATGTCCATAACACCTGCAACGACATCATGGATTTCGTGTTGGTCAGAGTCCCGCCCCCTATGGCAGGATTGCCCCGCCCCCGTTTCTCCCTGTACCTCTCCTCTCAGCTGCAGTATGGAGTCGTGCTGGTCTTCCACAGACAGTGTGAATTTTTATTAGAGGACACTCAGGGGGCGATTGACAAGCTGCTTCGTCTAAACCGAAAGGCTAACATTGATTTGATGGAGGAGGATACCAGGCAAAGTCACATGATCCCAGATGCTGTTGCCTTATTTGATGAGACCGAGGGTGCGAGAGATCCGTTCTTTGGGATCATGGAGTACGGACTGCCAAGTCCAAGCAGCTTAATACAGAGACGAGAAAAGGTTTTACTAGAGTCTGTCCCGCCTGCTAGAGAGCCATCGCCACCTTCAGATGGCATCACGGCGAGCCAGGAGTCCATCACTCTGACAGAACCAGAGCCACTCATCATGCCTGAGCCACAGTTTGAAGGAGCAGATCTGCAGGAGGCCAACATGATCGAACTACTGCTGGAGCAGCCGGATCACTTTCTTGAGCGTGAAGATGAGAGACAGATGGAgatagacagagacagagagCGAACAGAGGAGGACAGAGAGCTGATGGTGTCTGAGGAAAGAGAGCTGGAGAGAGCGGCTCTGGAGAGAGAGACAGCCAGAGATCTGACAATATCAGCCTCTTTAGATCTTGCACAAATCACCGGTGCATCAAGTCAGGATGCTGTTCTGCTCCCCGAGGAGGATTTGGGGCTGCCCATGGAGATGCCTGTGATAGAAGAAAGAGAAAAGACCCCCGTATCCGCGCCTGTGCCCATACCATCACCTCCACCTGAAGAGGAAACAGGGGTTGAACCAAGGAGACAGCAGGCGGTGGGAGAAAGAAGCCCTCGTCTAGAGGCTGCTGTACTGAGCCCTGAACCAGAggtgaagaagaggaggaggaggcagCTGCTCTTCGTGGATGAATATACACAGATTTCTCAGGACGAAATGAGGGCCCGCATTAATGACGTGGAGACGATGACCAGGCCTCTGGAGTCCATCATCCCACCATCCATTCAGAAGAAGGATGCCAGAGAACTGCTCACAAACCCTTGCATGAGTCTTCCTCCTGAAATCCTGACTCTATGGAAACAGGCGGCCGTGGTGAAGCCTATCCCTCCATCCGAGCAGCGCTGGGAGATTCCTGAGGCTGAAGAAACACTAGAGCGAGAGGAGGAGGAATGCCCACAACCACCAGAGCCAGAAGTGGA

Function

symbol description
rec8a Predicted to enable chromatin binding activity. Predicted to be involved in nuclear division and replication-born double-strand break repair via sister chromatid exchange. Predicted to act upstream of or within sister chromatid cohesion. Predicted to be located in nucleus. Predicted to be part of nuclear meiotic cohesin complex and nuclear mitotic cohesin complex. Predicted to be active in synaptonemal complex.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031843 True 1581 mRNA 0.51 13 6212205 6232517

Neighbor

gene id symbol gene type direction distance location
XLOC_016130 IPO13 coding downstream 30107 6150855 ~ 6182098 (-)
XLOC_016129 prdx1 coding downstream 96517 6104378 ~ 6115688 (-)
XLOC_016128 zte38 coding downstream 108170 6092058 ~ 6104035 (-)
XLOC_016127 uck2b coding downstream 146789 6051916 ~ 6065416 (-)
XLOC_016126 czib coding downstream 160369 6042039 ~ 6051836 (-)
XLOC_016132 arl14 coding upstream 28896 6261413 ~ 6262441 (-)
XLOC_016133 ppm1la coding upstream 33251 6265768 ~ 6292510 (-)
XLOC_016134 si:dkey-119f1.1 coding upstream 89106 6321623 ~ 6373829 (-)
XLOC_016135 rgs13 coding upstream 243050 6475567 ~ 6482240 (-)
XLOC_016136 rgs1 coding upstream 278982 6511499 ~ 6519017 (-)
XLOC_016123 NA non-coding downstream 371711 5838896 ~ 5840494 (-)
XLOC_016118 NA non-coding downstream 509557 5701098 ~ 5702648 (-)
XLOC_016113 NA non-coding downstream 758683 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 1397933 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1641102 4571013 ~ 4571103 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 533776 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 643234 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 676145 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 847785 7080302 ~ 7080925 (-)
XLOC_016146 NA non-coding upstream 1169974 7402491 ~ 7431590 (-)

Expression


Co-expression Network