XLOC_016133 (ppm1la)


Basic Information

Item Value
gene id XLOC_016133
gene name ppm1la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6265768 ~ 6292510 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031845
CGGTGTGTTGTTTTCCGTTCGAGCCGCCGCGGTCAGTCACGCAGCGCGCGGAGGAGACGGCAGCATGTGCAGCGGCGAATCAGCGATATAGAAACCGATAAAACTATCCGTGACGCGACAAAACAAGAGCAGAGACTCGTCGAAAACGCTCGCTAGCGGGACAGATGGCTGTACGGGAGGGAATGCGCTTGCTGTCGCTGGAGGTAACGGGATATGAGCTGTTATATGAAGCCCGTCGGTAGGGCACCAGAGGAAGATTGCAGCTGAAAACACCCGgatctcatcatcatcatcataataataatataaaagcaGCGTTTGCGTGGTTTTCGAGCATTCAgttgatgaacacacacacgtcGGGCTGCAGATGGGCTTTAATATCGGTCTGATGAAGTAATTTGAAGCCCACACTTCAGTCCCGGGGTGCAGTCTTGAGCGTGTGATGATAGGAGACACAATGACGCTTTTGTCTCTTTTGGGTCGCATCATGCGTTATTTCTTGCTCAGGCCAGAGACCTTGTTTCTGTTATGCATCAGCTTGGCCCTCTGGAGCTACTTCTTCCACACGGACGAGGTGAAAACCATCGTCAAGTCGAGCCGGGATGCCGTGAAGATGGTGAAGGGGAAAGTGGCGGAGATGATGATGAACGACAGGCTCGGCGGGCTGGACGTGCTGGACGCGGAGTTCTCCAAGACCTGGGAGTTCAAGAACAACAATGTGGCGGTGTACTCGATACAGGGCCGGAGAGACCACATGGAGGACCGCTTCGAGGTGCTCACCGACCTGGCCAACAGGAGCCACCCTTCAATCTTTGCTATTTTTGACGGACATGGTGGAGAGGGGGCTGCAGATTATGTGAAAGCCCACCTGCCGGAGGCTCTAAAGCAGCAGCTGCAGGCGTTCGAGAGGGAGAAGAAGGACAGTCCTCTCTCCTACCCCTCCATCCTGGAGCAGCGCATCCTGGCCGTGGACCGGGACATGGTGGAGAAGTTCTCTGCTTCTCATGATGAAGCAGGCACAACATGTCTGATAGCCTTGCTGTCTGACCGCGAGCTGACTGTGGCGAATGTTGGAGACTCTCGTGGCGTTCTCTGCGATAAAGATGGAAATGCTGTAGCCCTCTCGCACGATCACAAGCCCTACCAGCTGAAGGAGCGCAAGAGGATCAAGAGAGCAGGAGGCTTCATCAGTTTCAACGGTTCATGGCGTGTGCAGGGCATCCTGGCCATGTCTCGCTCACTAGGCGACTACCCACTGAAAAACCTGAACGTGGTCATCCCAGACCCCGACATCCTGACCTTCGACCTGGACAAGCTGCAGCCCGAGTTCATGATCCTGGCGTCAGACGGCCTGTGGGACGCCTTCAGCAACGAGGAGGCCGTGCGCTTCGTCCGGGAGCGTCTAGACGAGCCGCACTTCGGCGCCAAGAGCATCGTCCTGCAGTCGTTCTACCGCGGCTGTCCAGACAACATCACCGTCATGGTGGTCAAGTTCAAGAGCAGCTCGGCCAGCAAAACTGCAGAGTAGCCTTTCCATCAAGCAGAGGTGAGACGTTGTAATATAAGAGACAAGCCAAAAGCATTACAATAGATGCATGTGCCTACAAACACATGCATACCCagattcttcttctttttttggtgTGTGCCAAATGGACACTTGGGGGGGATATgatttttgaattgtttttcaATTCCTTACACTGTAAAGATGATGTATCCTGGCCTTCCGTCTTATACAGAGCAATATTATTTGTGAAACGGCTATCGGCTTGAATGGTAGAAAGACATTTATTGCCTTGAAGATGCACTCATAGATGTTTGTTCAGGATAAATCGCGTAAACatcataactttttttattttgaggtcaATACGCAGCTGATGGAACCATATCCAGCTCTTAAATTTGGATGTACACTGAAAAATTTTgaaattttttaaggtaaatggttGCAAAGAAGGAATATAGGCTGAATTTGAACATCAAATTAGGGTTAACACTACTTAATTTGATCTATTTGATttaattcagctcatataaatagtttgcaaccacttacctttgcAAAAAAAAAGGGTTGATTGGATTAactcatttttttaaggtaagtggttgcaaacagtatatatgagctgaatttaaacaaacaaatttgttTGAACACtgctcaatttattttatttgtttaaatttggcCCTTCtatattgtttgcaaccacttaacttaaataaatagagtaaatccaattaatctttTTTGTTTAAGTGTACATGATCCGCTCATATCACTTCAGGGCATGTATGCCAATGTACACTGGTGCTGCTCATCagtttgtgtaaatgtgtttggGATTAAGTTTGCGTTTGATTACGAATGTTAGACTTGATTTAACGTCATAACCGGTCCCGCTCATGATCGTCAGGTTTCTCCTGTGTTTAGGTCACTGTTTTAATGGCTTTATGCATACCGCAGTGGACGGATTTAGGGTTATATGATGTGTATTTACTTTGTGAAGACTGTTGGGTTAATACTGGCTTACAGTTTTTCAACTTTCCTCTTAAGAAGTGTTACTTAAATGTTAACCTAATTAGGAAAAGAATTGGCACAAATCCCCGTCTACACAAAATCTGAATTTCTTGCACTGTGTGAAATGTATGTGGGAGATTAAAGCGATTAAATAAACCTTACAAGTCAAGCGAAAA

Function

symbol description
ppm1la Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPM1L (protein phosphatase, Mg2+/Mn2+ dependent 1L).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-118 Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPM1L (protein phosphatase, Mg2+/Mn2+ dependent 1L).

Ensembl:

ensembl_id ENSDARG00000063218

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031845 True 2709 mRNA 0.46 4 6265768 6292510

Neighbor

gene id symbol gene type direction distance location
XLOC_016132 arl14 coding downstream 3327 6261413 ~ 6262441 (-)
XLOC_016131 rec8a coding downstream 33251 6212205 ~ 6232517 (-)
XLOC_016130 IPO13 coding downstream 83670 6150855 ~ 6182098 (-)
XLOC_016129 prdx1 coding downstream 150080 6104378 ~ 6115688 (-)
XLOC_016128 zte38 coding downstream 161733 6092058 ~ 6104035 (-)
XLOC_016134 si:dkey-119f1.1 coding upstream 29113 6321623 ~ 6373829 (-)
XLOC_016135 rgs13 coding upstream 183057 6475567 ~ 6482240 (-)
XLOC_016136 rgs1 coding upstream 218989 6511499 ~ 6519017 (-)
XLOC_016137 rgs18 coding upstream 243355 6535865 ~ 6548838 (-)
XLOC_016138 CABZ01077605.1 coding upstream 473783 6766293 ~ 6766407 (-)
XLOC_016123 NA non-coding downstream 425274 5838896 ~ 5840494 (-)
XLOC_016118 NA non-coding downstream 563120 5701098 ~ 5702648 (-)
XLOC_016113 NA non-coding downstream 812246 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 1451496 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1694665 4571013 ~ 4571103 (-)
XLOC_016139 CU694525.1 non-coding upstream 583241 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 616152 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 787792 7080302 ~ 7080925 (-)
XLOC_016146 NA non-coding upstream 1109981 7402491 ~ 7431590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01210703_01220270 PPM1L, PPM1LA, PPM1L.L coding CI01000004 null 1210454 ~ 1220283 (+)
bowfin (Amia calva) AMCG00009321 ppm1l,LOC107722109,LOC107681725,LOC107560765 coding CM030126.1 CM030126.1 32950616 ~ 32958237 (-)