XLOC_016136 (rgs1)


Basic Information

Item Value
gene id XLOC_016136
gene name rgs1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6511499 ~ 6519017 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031848
GTTGAAGCTGCACTTTGACGGGATGCATCAAAACATGCTGTTTTCCTACAAGCGTCACTATCTGTCTTGAATTCAACCGCAAAGTAAAGCGAAGTGACTTTTCCCTTGTCCATCAGCTCTGCGGTGAAGATGTTTTCTAGATGACCTGCGAGCCTGAAGAGATGACCCTGCCCAGAGCTTTGCATGCTGATTTCCATGTGTTCCATTCATGCCAGTAAACGTGTTCGGACCCTCCAGAGCCATAAAGAGCCACCGAGTGAAGCAGAGACTCATGCCGAAGACACTGCTGACAGAGATGGCCATAAAATTTTGTTGCTTTTCTCAGGAGCCTGTGGACGATGTGGACTCCTGGGGTGAGTCCATCGAGAAGCTGCTGTCCTGTAAAGCGGGACAGGCGGCTTTCCAGGACTTCCTGAAGTCGGAATACAGTGAGGAAAATATTCTGTTCTGGCTGGCATGTGAGGAATATAAAAAGGTGACGAATGAGCCGGAGATGATCAGCATGGCCAATCAGATCTACACTGAGTTTGTGCAGACGGAAGCACCCAGACAGGTTAACATCGATTCTGGGACTCGCACAAATATAACAAACAGCATCTCGGAGCCAACACGAAGCTCATTTGACACAGCACAGAAGATGATCTTCAGTCTAATGACCAGAGACTGCTATCCCAGGTTTCTGAAGTCCGACATCTACCAGTCCATCCTGCAAAAGCATGGAAAGAGATGACTTCATAACTAGTGGCGTATCCAGAGTACCAGTTGccataaacatgtttttttttaatcttgttttataTTTGGTAAGCATAATAAGTTTAGCTTTGgacttttaatattgttatttgtgAAGGAAAACACTCATTTCAGTGTCACTCTATAGGATGCAGTCTGATTTTCATGTTCAGTTGCCCATTGATTGATTTTTCCTCTTCACAGAAAATCAAACCAATTAATCACGTCTCATTTTAAACCATAACAGAAAATTGTATAATCACCATCATATCATCAAAAGAATGTTATAAATTATCCCGTGTGGGATTAAAGGATCTGTTATGGGCCTGCAATTGCCTGGTAATCAGCATACTGTTGAGAAATCCAGAAAAAGAGGATCTGAGCGCTCCTTTTTACACATGTACAGCCAATTCTCCTACAGTTAGCTTCTGTAGTAGTGCAacgtttttattagtttattaatcaggcatttaaaaaacataccattactattattgttgtttgttataattattatgatgtaaaatattttattatcactactactactttttttttttagggtttcTAATAATTGATGTCAGATCGTAAAGAGGGAAATTTGTACTATGAATTTAAGAGACTgtttaaaaaatgaccactatTATCTAGGCAGGAACATCCTggatttcttaaataaaaaaggagaaaaatctgtatataaaattgtaataaatgaacataaaatatg
>TCONS_00031849
TCCAGAGCCATAAAGAGCCACCGAGTGAAGCAGAGACTCATGCCGAAGACACTGCTGACAGAGATGGCCATAAAGAGCCTGTGGACGATGTGGACTCCTGGGGTGAGTCCATCGAGAAGCTGCTGTCCTGTAAAGCGGGACAGGCGGCTTTCCAGGACTTCCTGAAGTCGGAATACAGTGAGGAAAATATTCTGTTCTGGCTGGCATGTGAGGAATATAAAAAGGTGACGAATGAGCCGGAGATGATCAGCATGGCCAATCAGATCTACACTGAGTTTGTGCAGACGGAAGCACCCAGACAGGTTAACATCGATTCTGGGACTCGCACAAATATAACAAACAGCATCTCGGAGCCAACACGAAGCTCATTTGACACAGCACAGAAGATGATCTTCAGTCTAATGACCAGAGACTGCTATCCCAGGTTTCTGAAGTCCGACATCTACCAGTCCATCCTGCAAAAGCATGGAAAGAGATGACTTCATAACTAGTGGCGTATCCAGAGTACCAGTTGccataaacatgtttttttttaatcttgttttataTTTGGTAAGCATAATAAGTTTAGCTTTGgacttttaatattgttatttgtgAAGGAAAACACTCATTTCAGTGTCACTCTATAGGATGCAGTCTGATTTTCATGTTCAGTTGCCCATTGATTGATTTTTCCTCTTCACAGAAAATCAAACCAATTAATCACGTCTCATTTTAAACCATAACAGAAAATTGTATAATCACCATCATATCATCAAAAGAATGTTATAAATTATCCCGTGTGGGATTAAAGGATCTGTTATGGGCCTGCAATTGCCTGGTAATCAGCATACTGTTGAGAAATCCAGAAAAAGAGGATCTGAGCGCTCCTTTTTACACATGTACAGCCAATTCTCCTACAGTTAGCTTCTGTAGTAGTGCAacgtttttatt

Function

symbol description
rgs1 Orthologous to human RGS1 (regulator of G protein signaling 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-145 Orthologous to human RGS1 (regulator of G protein signaling 1).

Ensembl:

ensembl_id ENSDARG00000089077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031848 False 1465 mRNA 0.39 4 6511499 6519017
TCONS_00031849 True 936 mRNA 0.42 4 6511777 6518785

Neighbor

gene id symbol gene type direction distance location
XLOC_016135 rgs13 coding downstream 29259 6475567 ~ 6482240 (-)
XLOC_016134 si:dkey-119f1.1 coding downstream 137670 6321623 ~ 6373829 (-)
XLOC_016133 ppm1la coding downstream 218989 6265768 ~ 6292510 (-)
XLOC_016132 arl14 coding downstream 249058 6261413 ~ 6262441 (-)
XLOC_016131 rec8a coding downstream 278982 6212205 ~ 6232517 (-)
XLOC_016137 rgs18 coding upstream 16848 6535865 ~ 6548838 (-)
XLOC_016138 CABZ01077605.1 coding upstream 247276 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 coding upstream 356734 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 coding upstream 389645 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 coding upstream 561285 7080302 ~ 7080925 (-)
XLOC_016123 NA non-coding downstream 671005 5838896 ~ 5840494 (-)
XLOC_016118 NA non-coding downstream 808851 5701098 ~ 5702648 (-)
XLOC_016113 NA non-coding downstream 1057977 5449781 ~ 5453522 (-)
XLOC_016105 CU929154.1 non-coding downstream 1697227 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1940396 4571013 ~ 4571103 (-)
XLOC_016146 NA non-coding upstream 883474 7402491 ~ 7431590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01094661_01097428 NA coding CI01000004 null 1094661 ~ 1097658 (+)