XLOC_016142 (extl2)


Basic Information

Item Value
gene id XLOC_016142
gene name extl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7120582 ~ 7131691 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031855
ATGAGGGTTCACTTGTGCTGTTGCAGGTCATTGGGCCGCGTGCGAACACACGTCGTCATCGGgtttatcctgctgctgcttctggcTGGAGTCTCTCTGACCTTTTTACTGCCCAACAATGAAGACATCAATATTCTCCGAGAGCTCCGACGAAGCTCCAACACCTCACGAACCCTGGCGGACCCAGAGGAGAGCTTTACTATAATTATGCAGACCTACAACCGCACCGATGTTCTCCTGAGGCTCCTCAACCATTACCAGGCAGTTCCTCACCTGCAGTGCATCATTATAGTGTGGAACAACCCAGGAGAAACGCCACCCAGGAGGCTGTGGGACGAGCTTGGCCCTCATCCTGTGCCCGTCCTCTTCAGGGAGCAGAGAGTCAACAGAATGCGCAACCGACTGATGATGCACCCCGATGTCAAGACTGATGCTGTTTTGATGCTGGACGATGACATATTGCTGAGTGTTCCTGATATCAGCTTCGCATTTTCTGTCTGGAAGcaaTTCCCAGATCAGATTGTGGGATTTGTTCCACGGAAGCATGTAAGCTCTGCATCTGGTGTTTACAGCTATGGCAGCTTTGAGCTTCAGGATCCTGACAAAGGTGGAGGAGACAGGTATTCAATGATCCTGGTGGGAGCTTCGTTCTTTCATCGCCGCTTCCTGAAGCAGTTCCAGGAGCAGCCTGCTGAAGTGCACACCCTGCTGGACCGAACGCAGAACTGTGACGACATCGCCATGAACTTTATCGTGGCCCGTCAACTTTCAAAGCGGCCCTCCGGGGTGTTTGTGAAGCCAGTGCATATGAGTAATCTAGAGAAGGACGCTAGTAGCGGGTTTGTTGGCATGTGGCATCGACCGGAGCACATGCTGCAGCGCTCCTACTGCCTCAACAAACTCGCACAGATCTACGGACACATGCCGCTCCGATACTCCAACATCATGATCACTCAGTTGGGCTTCCCAAGCTATGCTAATCACAAGAGCAGGATGTGATGTCGGCATATTTGAGAAGCAGATAACTATGAagcatttcaacatttttttaaatgtttacttgATATTAActtgcaaattataaataaaatgtcagcATAAGTTTTTTGtgacaataaattatttttgttgtttgtttttcattttattatgaagATTTTGCTTTTAAGATCCAGAATTTCATTCCGTTTCACTCTAAGAAAAAAGTGACCATTGTTTTCTTTGATTATATTGGGATCCTGACTGCTTTCTAAGcaaatttggggattttttttattgtaataataaccTATGAACAGAAGTTCAACCAATCACTTTAAGTTAATTACGCATtaccaaaaatgtacttaaaggtCACCCATTTTGtctctttttcaagatttaagagaagtcttttgtgtctccaggatGTGTCTAAAGTTTCTGCTtgaaacacccatcagattatttatcataGCATGCAGAACATtaggattttctgctctgaacacactgTAGCTGTATTTTTTGTCTGTGtctttgggtgctttcacacctgccttatttagttcgattgaatcgcactagagtttgttttcccttttggtgcggttcgtttgggcaggtgagaatgcagcaatcgtactcgagtgcgcaccaaaagcggactaaataagcgtaccgagacgtgcttgaagaggtggtctcggtacgctttcaaacgaaccgtggagcggttcgattgtggtgagaatatgatccgaactaaaacaggtccaaaagtactgcgccttttagTCTAATTCATctgccgtaggctgatgcgctgtgcattatgggatgtggaggaaaaatatttgttgacagcgctttaccagagagagaggggaaaacattacctgatggatcgttggtaatatttccgcaagatgagcatgtcgcagtttagctaaattaattcacgtctcctgctgaagtgacgagcgatgcattaaacactgttttccagccgcagccgtgcttcattctcgaaatgtatagtttgtctaaagcagggatacaatcagtcagcgcagtcgtccctccatagtaaaaagcgacaaTTTATGTCTGccagttttgtttacctgcgggagttcattggcattttcccgcacgtgaattccgaccaatcaataagcagtttatgaaatatgttcaacaacatctggccaatgagagatgtggattttgtcagatgactgcattttggttcgtttcaactggttcggacacaagccagcagtgtggtgtgaaaacgacccaaagacggcagaagatgcaacaatgtatcatttattacccttggtgcggaccaaatgaagccaactacagatgtgaaagcacccttaatgctAGCTCTCCCCGCCTACCATTCCCTCgagcctgtcagagtgtgcctcaatctctggctGCATACATtggataaacagcacagtgacagacataaaggaagcagatcttgcgtaacgtttgtgagaaatactacagtaagaactttccaattgttgttgttattattatttgatgtgtttgttgaGGAGTTGCAACTATGAggcacacacaatgtcattacaaagttctcgtattcacacagacacacgtttttgcatggcaaatgtgacaggatacacgttaatatccactgctctaAGGACATCCGTTTTGTTAATGTACAAATATACCTggtttaacgtccacaaaccgggattgaagctactttttataattgtactaacACGCGATAAAGACGGTAAAACCACTGTAATccattacaaacatgcaccgttttaaaaccgttttaaacttgtaaaactcatttttgatcacatttgatgatgattgatgatcacagagcgctgaacagatcttttaatcttagTTGCTTTGTGCACGCCCTGTCTTGTTGAtgattaagctgcggtcacactagagtttgtgtgttcgatattctgtcatgcggcgctgtgaaaaggggcgggattaaacaagcttattagacatttaaaaaagcgagcgattgctcaatgttgtaaatttctgtccagagaggtcatgttttgatcctcggttggtctcatgcagtcaagtgatgcgatttcgcaggtcagagttcaccaagcttgaactttgcaccacagcaacctgcgaaacttgacgcatgactctgcgtttccggtctgatgcattcgcgtgcgtatgaatggaagtctataggaggaaaagcccagtgtggcCGCAGCTTTATAcgtgttactacagagacatattaatacacagctgtcaatcaatttggtgggtggggaaaccgcatTTAAAATGGAAGgtatttgaatcctattttaacgtcaggaaattaaaaaaacgagacttattgtgtttctagcactccaatatgactgtggacacactatacccacacacagttctgtccaaacagcttacaaaagctGATTTTCACCATTTCTTTAAAGTAATGAATGTGATTTGAGTGTACGCTAAACAGAAACCagataaaatctttttttgacaGTGGCTACATTTGAAAAActcattaaagaagattttctgTGCCGATAATGCAACAATATACTTTCCGTGCCAAGGTATACTTCCTGAGCACAAATCGTTTCATCTCCTCAGTAAAAACATGGATCAAAGTGAAAGAAATATCAACATAACTTCTATAATGTTTGTTGAAAGTTTTTAGTAACACAAGAGATTACACAGTAAAACTGTTTGATGAATTAGCTTGCA
>TCONS_00031856
CTTCTGGACTGGAGTTTCGTATGATGGGAATACCATGAGGGTTCACTTGTGCTGTTGCAGGTCATTGGGCCGCGTGCGAACACACGTCGTCATCGGgtttatcctgctgctgcttctggcTGGAGTCTCTCTGACCTTTTTACTGCCCAACAATGAAGACATCAATATTCTCCGAGAGCTCCGACGAAGCTCCAACACCTCACGAACCCTGGCGGACCCAGAGGAGAGCTTTACTATAATTATGCAGACCTACAACCGCACCGATGTTCTCCTGAGGCTCCTCAACCATTACCAGGCAGTTCCTCACCTGCAGTGCATCATTATAGTGTGGAACAACCCAGGAGAAACGCCACCCAGGAGGCTGTGGGACGAGCTTGGCCCTCATCCTGTGCCCGTCCTCTTCAGGGAGCAGAGAGTCAACAGAATGCGCAACCGACTGATGATGCACCCCGATGTCAAGACTGATGCTGTTTTGATGCTGGACGATGACATATTGCTGAGTGTTCCTGATATCAGCTTCGCATTTTCTGTCTGGAAGcaaTTCCCAGATCAGATTGTGGGATTTGTTCCACGGAAGCATGTAAGCTCTGCATCTGGTGTTTACAGCTATGGCAGCTTTGAGCTTCAGGATCCTGACAAAGGTGGAGGAGACAGGTATTCAATGATCCTGGTGGGAGCTTCGTTCTTTCATCGCCGCTTCCTGAAGCAGTTCCAGGAGCAGCCTGCTGAAGTGCACACCCTGCTGGACCGAACGCAGAACTGTGACGACATCGCCATGAACTTTATCGTGGCCCGTCAACTTTCAAAGCGGCCCTCCGGGGTGTTTGTGAAGCCAGTGCATATGAGTAATCTAGAGAAGGACGCTAGTAGCGGGTTTGTTGGCATGTGGCATCGACCGGAGCACATGCTGCAGCGCTCCTACTGCCTCAACAAACTCGCACAGATCTACGGACACATGCCGCTCCGATACTCCAACATCATGATCACTCAGTTGGGCTTCCCAAGCTATGCTAATCACAAGAGCAGGATGTGATGTCGGCATATTTGAGAAGCAGGTACCGTTTCTTTTTTTCAAGTTCTTTGAACAAGTGCGATCTCAAAATGTGTACATCTCACCAAAAATGGAGCTATTCTGGAACAAAAGCATTTCTACATTCTCAGGAATTGATGGTTTTACATACAATCAGAATTTATGGGTTACAGATatgattttttatgtatatatattcctTTGACGGAAATCCAAAACCAAACACATTctttataaatattaacaataataatagtaatattgagagtaaataaaataatttattaatagcaTTTTCAATAACAGCATTTTTATTAGTGCCAATAAATAACAAGtgtaatgtagattttttttttgtatttcacaGATAACTATGAagcatttcaacatttttttaaatgtttacttgATATTAActtgcaaattataaataaaatgtcagcATAAGTTTTTTGtgacaataaa

Function

symbol description
extl2 Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-060929-1122 Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000063191

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031855 False 3774 mRNA 0.43 6 7120582 7131657
TCONS_00031856 True 1495 mRNA 0.44 5 7123237 7131691

Neighbor

gene id symbol gene type direction distance location
XLOC_016141 AL953893.1 coding downstream 39657 7080302 ~ 7080925 (-)
XLOC_016139 CU694525.1 coding downstream 201266 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 coding downstream 211901 6908662 ~ 6908681 (-)
XLOC_016138 CABZ01077605.1 coding downstream 354175 6766293 ~ 6766407 (-)
XLOC_016137 rgs18 coding downstream 571744 6535865 ~ 6548838 (-)
XLOC_016143 rc3h1b coding upstream 17897 7149588 ~ 7189594 (-)
XLOC_016144 zgc:153115 coding upstream 106858 7238549 ~ 7246848 (-)
XLOC_016145 si:dkeyp-106c3.2 coding upstream 156406 7288097 ~ 7289403 (-)
XLOC_016146 NA coding upstream 270800 7402491 ~ 7431590 (-)
XLOC_016147 FO203364.1 coding upstream 355901 7487592 ~ 7494464 (-)
XLOC_016123 NA non-coding downstream 1280088 5838896 ~ 5840494 (-)
XLOC_016148 NA non-coding upstream 414995 7546686 ~ 7548019 (-)
XLOC_016156 NA non-coding upstream 783660 7915351 ~ 7916387 (-)
XLOC_016159 NA non-coding upstream 1358897 8490588 ~ 8494716 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_00617015_00621040 EXTL2 coding CI01000004 null 617015 ~ 621258 (+)