XLOC_016144 (zgc:153115)


Basic Information

Item Value
gene id XLOC_016144
gene name zgc:153115
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7238549 ~ 7246848 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031859
TTCCTAAATTCGCTACCGGGGGCGTGGCGTGGGCTTTGCCGGTTCTAGCAGCAGACACAATGAAACGAGGGGCGATGTAGGACACCACGTTGGGGCTTGAAACGCAGACACGCCGATAGCAGAGGTCGTCGCTGATGAGAAAAAGCAGCAAGTTGAAAGTCTTTGGAGAACAACCGACCGGGCTCAGGAAACGAGGCACTCCGTCATAACTTTAGCTTCGTCGTTAAACGCGGCCGCGATAAAATGTCGTTCGCCTATTCGGATTATCTGGCCGCCGAGTGTCTGGTGTCCATATCCAGCGGTCCCGTCCTCCACCGACCCACCCCGGTGTCTGGTGCGGCTCAGGCCCCTCCTCAGGGCCTTCCAGCCGGAGAGCCAGACGGGTCGAGCGAGGACAGGGAGGTGCGGGAGACGCTCCGGTTAGACGGGGCCAACATGATGACGGTGGCGGAGATCCTCACCGACCTGCACGGCAAGTTTCGCCCCATGTCGGCCTATTCTGAAAGCAGCAACTCGTCATGCGGGGAGAGCGGCTACACCACGTTGTCTGACTCCACCACCCCTACGCCGACCATGACCCCCTCTGCCACCCCTGTCCCGGGACAGTCTCAGCAGATTTGGGGAGGAGGGGGAGCGCCACGGTCCCCCACTAAGCGTCACCCCTGTACTTTCGACGGGTGTGACAGGGTGTACGGCAAATCATCCCATCTGAAAGCGCACATCAGGACCCACACAGGTGAGAGGCCTTTTCCATGCACTTGGCCCGAGTGTGAAAAGAAGTTCGCTCGTTCGGATGAGTTGGCACGACATCTGCGTACTCACACTGGCGAGAAGCGCTTCCTATGTCCACTCTGCGACAAACGCTTCATGCGCAGCGACCACCTCATCAAACACGCCCGCCGGCACCCCAACTTCCAACCCTCCATGATCAACCGCAAAGGTTCGGCTCAGGGATCCATTTCCATCCAGCCTGCTGCCGCCAGCACTGCCGAGTAAAACGCCGGGACCCCCGCCTTCTGCACTGTGACCACCATATTTAAGAAGCTGCAGCTTGACTCGATCGCCGTGCATGCTGAGAGCCTTTCAAAGCTCAATCCTCATTTCCACAGGCCAAAAATGAAGAACTTCACCACGTCTTCCTCCGAAACCTCTTCTCCCAACCAGTGACGACCAAAACGGGCGAAGGAGACACAAATGCTCAAGCACATTCCGAGTCACGTGATTCTGAAATCACATGATCTTAAAATGCTTGCTATTGGTGGAACAGACcgatctaaaaaaaaattcaacacttTTTTTTGGATGCATGCAGACAAAATGGCCACCAGCAGTAGCACAATGTTTTCCATGAGTAATCTCGTATCACTTGTCAGCCATGTTTTAGAACCTCAGAAAGTGTGTGTCAGTTTAAGGGAAAGTCTACCTACTCTTGTGTTTTTATAGTCGTTCCATACAGCTTACAAAATACACACAACCTTGATTCCATATCTATTGTATTGTCAGAAATGACAAACCGTCTCTAGGTTTACTTGTCCAGACATTTTCTGCAATGCAATAACCACATTCAGTTGCGGAATGATTGCAAAGTTTTTGTACAATACTATTGAATTTGTCACACATGCAGTGACTTAATGCATTCCCAGCAAGCATTCCttgtttttaaagatgtctaatagacttCTAAACatagacatcttggctaaaacagggctaaatttgggctgtcagtgaaaatctaatagacgtctaagaatagcccaaaactagactagttgtcaaataaacagatatgaaagtctgtctatttgacgactagtctagttttcaGCTATCCTATCCTAGTTTTCACTGACGGCCCAAgcttagtcttgttttagccaagctgttgACGTTTAggtgtctattaaacacaaaactgtttGCTGGGTTCTTAAACCTCTTCGGATTGGCTAATCTCAAGTTCGTCAGATCCTTAAATTTGATTCTCAATTAAATCGATGGAACTGAAATGGCCAGTGGGTTTCCTTTTGGGTCGAAACACTGCCTGCAAATGCCGCTTTTCCACACCACTTTCCCTACTGAAATGGTAATAAGTTATTTTCatcttttatttacttttgtgcTTACGTTTTCTATTAAGTAGTATCAGCATGGCATCTGAaatagtttgttttattattattattataattaatattattagaccgtgcatttattatgattattttccaTTTTGAGGAACTCCATGTAATTTTGACATGTTGGTACATGTAGCAATGTGTTTAATAGTAATGTGGATACGTGTAGATAAATATCTATGCTTGCAGCTTCAATGGTAAAGATGTTATTATATGAACTACTAGAAGTAATACACCTTATATTAGGGGTGAGAGTACACGCTTGAATAGGTTAGTGCTGCTTGTGTGCGAATGTTTGCGCGTCACgtttgtctgtatgtgtgtgtgtgtgtgtgtgtatattcacGCGGGAGAGTCAATCTCCGAAACTGTCCCACCGCGGACCTCTTACAACTATCTCagagaacaaaaagaaaaatcaggAAACTCAGAAAGCCTTAAAAATCTTTTGACTTGTTTTGCACCATTGTTTACTGTCGAATATATTCTCTACAGGTATGCCGTCAGGCGTCATTCTTCTCAACTAAAGAAATACACATGCAATATTGCACTTTTTTTCTTACTGGTATTGTCAACGATGCTAGTCGTCTGCTAGTGTGATGGGTTTCACTGTATAGATGCTACCGCGCAGTGCTCAACTAAACGAACACTGCGGAAGCAGATAAAGACTCGTCACGATAAATCAATACATTCGTAAATATATGCACCTTCGTTTGAGTGCTTAAATCAGTGTGAGGAAAAACtgacttcttctttttttttgtggacTTCTcaatttgatttgtgttttgcTTTTGATGGCATCAATGGTTCATCACAGCGTTTCTAATCATGCAATACTCCGAGCGTTTTAAGTGACTGCTGGCAGTAGCTGGAAGCGCAATGGAGACAACCGGTAAACGTTCTCAACAAAAACTAAACCAATCGAACCAAATCCAGAATAGTATCTAAGACTgtgtttgttctgtagctaattAAATAACGTATTCCTCACAATGCTTGTATGTGTGGCCgggttttttcttttcttttttttttgttgtgtgcatgtgtgtgtgtgtgtgtcgtcttTTAATAGTTGTTTTCCTGTAGCGTTTCGTCTGTGGATCTGTTGACCATTGACGACATCAGTGGTACACTGTGTTGGGCTTTGTGTGCGATTCCTAACAGACTGAGACTATTGTGATCGTGtccttttaaaaagtttttccacttacaatgcCCCCTTTTAGCAGTCTGGGTTTAGCATTTGATATCCCACCCATTATACTCAACATTCGCAGCTAGCATTCCGGACAGCCATCACAAACTACTGGATCAAGTCTGAGTTTTTTGatgattgttatttttttgtgtggtcTTTGATTTCAGCTGTTATCTTTCGTATTTGGTTTGATATACtggaaggttttgttttttatgctttTGTATTGGTTTATGTACTGTAGATGTCTATAGTATGCAGAACATAGCTTTCTAGAGGGTTTAAGACAGAACCTAGATAGCGTAAAACATCTAAAGTTCCTTCTGGGGGGTAAAATGCTGCGTTTTTCGCTGTTCGAGGCATCAGATCTCTGCATGTCCAATTCAAAGTGAACTATGATGTGTGCAAGTGCGGCTGCTTTTAGTTACAATGCTAGATTGAGAAAATGTAGTGacagcttttttttattattattgctttctTGCTTGGCGTACAATCTAGATCTTGTCCACCGGTTTTTGACACACTAAAACGGTTGTGCACGGATTGGCAGGTTGTCTGTAGTGATTACACTAAAAGGATGTGTAAATTAAAGTCTCGGTCTACAGACATGTCTCGTATAAAAGAGAACTGATGGGATTTGTCAATACGGAAGCTTTCACGTTTTCTCCTCAGGTGATAAAATGTAATGCTGAAAACCTCTGTCCTTCATGAGCAGGACCTAATGTTCAACTTTCATTTCATTCGCTCTTGTTTTTCAATATTGCtctgtttacttttatttattacatgctTTGTTTTAGGTgtgctttaaaatatcttcttttttcagTACTTATGAGACTTGATTGATAATTTGATTCGATTTGTTTACCTCCaacagaaacaacaaaaaaacccTCCActgctttttaaataataaaactgattaagGATTA
>TCONS_00031860
AACATGATGACGGTGGCGGAGATCCTCACCGACCTGCACGGCAAGTTTCGCCCCATGTCGGCCTATTCTGAAAGCAGCAACTCGTCATGCGGGGAGAGCGGCTACACCACGTTGTCTGACTCCACCACCCCTACGCCGACCATGACCCCCTCTGCCACCCCTGTCCCGGGACAGTCTCAGCAGATTTGGGGAGGAGGGGGAGCGCCACGGTCCCCCACTAAGCGTCACCCCTGTACTTTCGACGGGTGTGACAGGGTGTACGGCAAATCATCCCATCTGAAAGCGCACATCAGGACCCACACAGGTGAGAGGCCTTTTCCATGCACTTGGCCCGAGTGTGAAAAGAAGTTCGCTCGTTCGGATGAGTTGGCACGACATCTGCGTACTCACACTGGCGAGAAGCGCTTCCTATGTCCACTCTGCGACAAACGCTTCATGCGCAGCGACCACCTCATCAAACACGCCCGCCGGCACCCCAACTTCCAACCCTCCATGATCAACCGCAAAGGTTCGGCTCAGGGATCCATTTCCATCCAGCCTGCTGCCGCCAGCACTGCCGAGTAAAACGCCGGGACCCCCGCCTTCT

Function

symbol description
zgc:153115 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endocrine pancreas development. Orthologous to human KLF14 (Kruppel like factor 14) and KLF9 (Kruppel like factor 9).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-418 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endocrine pancreas development. Orthologous to human KLF14 (Kruppel like factor 14) and KLF9 (Kruppel like factor 9).

Ensembl:

ensembl_id ENSDARG00000069342

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031859 False 4280 mRNA 0.43 3 7238549 7246848
TCONS_00031860 True 586 mRNA 0.60 2 7241811 7246338

Neighbor

gene id symbol gene type direction distance location
XLOC_016143 rc3h1b coding downstream 48955 7149588 ~ 7189594 (-)
XLOC_016142 extl2 coding downstream 106858 7120582 ~ 7131691 (-)
XLOC_016141 AL953893.1 coding downstream 157624 7080302 ~ 7080925 (-)
XLOC_016139 CU694525.1 coding downstream 319233 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 coding downstream 329868 6908662 ~ 6908681 (-)
XLOC_016145 si:dkeyp-106c3.2 coding upstream 41249 7288097 ~ 7289403 (-)
XLOC_016146 NA coding upstream 155643 7402491 ~ 7431590 (-)
XLOC_016147 FO203364.1 coding upstream 240744 7487592 ~ 7494464 (-)
XLOC_016148 NA coding upstream 299838 7546686 ~ 7548019 (-)
XLOC_016149 CABZ01021599.1 coding upstream 355148 7601996 ~ 7605121 (-)
XLOC_016138 CABZ01077605.1 non-coding downstream 472142 6766293 ~ 6766407 (-)
XLOC_016123 NA non-coding downstream 1398055 5838896 ~ 5840494 (-)
XLOC_016156 NA non-coding upstream 668503 7915351 ~ 7916387 (-)
XLOC_016159 NA non-coding upstream 1243740 8490588 ~ 8494716 (-)

Expression


Co-expression Network