XLOC_016145 (si:dkeyp-106c3.2)


Basic Information

Item Value
gene id XLOC_016145
gene name si:dkeyp-106c3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7288097 ~ 7289403 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031861
gcctattttcaaaacaaaagccGCGGTTTTCAAGTTATGATGACGTttgttatacattatatttagttACACATTATACTTGGTTACAAAGCGTTGGTTAATTTAAGTTGACTTTTCTCGTTAGCAACACGCTAAAGTTTTGTTCACTCGGTCCGAGGGCAGCGTCtcatgaacagacagacagaaatgtcAGAGCTTGGTCTAGGACGAAAACGAAGAATTGACATCTGGTCAAACTTCACATATGACAACAAGGACAACAAGAGCGTCTGTAAACCATGTGGAGTAAAAATCGCTGGGAAAAACACCACCAACTTGAAGCGACATTTACAGACGGCTCATCCAGAAATCCACACCAAGATACAGAAGATGTCTGATGACCATGGGCCAGGTGGAAATAAAGCTAGTGATGCTACTAGTACAACACAGCAGCAGGCCATCTCAGATTTCCTAAGGTCTTCAAAGTACAAGACTGAATCAAAGGAACAACAGACCAAGGAGCAGGCCATAGCTAGATAGATTGGACGGACAGGTTTACCACTCACAACAATTGAGGATGAGGACTTTGTGCTAATGATGGGGATGATAGATGGGAGACTAACAGTTccaaagaaaactaaaaatagcaatttaattaaaacacagtATGAATGCTGTACTTTATCTTGAAAGAATGTCATATGCGTTTCATATAATTCAGGGACAATGCATATCTTTTTCAGGGAGCATGTATATTGTTCAGGGAGAGCAGGTCTTGTGgttattttttgtgaaaaagactCATGTTTTTGAcatgtaataaaatgtttttattacaacAATTAGATATGTGCCTGTATTCTATATATGCttccatatattatattatacttacaATTACATGAATTATGGAGAAAAATCTGCTAATATTTGGTCTACTAAGACTAATAGACTTAAGACTAAACTAAGACTAAAACTTTTATGATATTTAGTCAACTAAACTAGACTAAGACTAAAAGATTTCAGATGA

Function

symbol description
si:dkeyp-106c3.2 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-527 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000095549

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031861 True 1009 mRNA 0.36 2 7288097 7289403

Neighbor

gene id symbol gene type direction distance location
XLOC_016144 zgc:153115 coding downstream 41249 7238549 ~ 7246848 (-)
XLOC_016143 rc3h1b coding downstream 98503 7149588 ~ 7189594 (-)
XLOC_016142 extl2 coding downstream 156406 7120582 ~ 7131691 (-)
XLOC_016141 AL953893.1 coding downstream 207172 7080302 ~ 7080925 (-)
XLOC_016139 CU694525.1 coding downstream 368781 6875751 ~ 6919316 (-)
XLOC_016146 NA coding upstream 113088 7402491 ~ 7431590 (-)
XLOC_016147 FO203364.1 coding upstream 198189 7487592 ~ 7494464 (-)
XLOC_016148 NA coding upstream 257283 7546686 ~ 7548019 (-)
XLOC_016149 CABZ01021599.1 coding upstream 312593 7601996 ~ 7605121 (-)
XLOC_016150 CABZ01021592.1 coding upstream 374539 7663942 ~ 7666021 (-)
XLOC_016140 CU693440.1 non-coding downstream 379416 6908662 ~ 6908681 (-)
XLOC_016138 CABZ01077605.1 non-coding downstream 521690 6766293 ~ 6766407 (-)
XLOC_016123 NA non-coding downstream 1447603 5838896 ~ 5840494 (-)
XLOC_016156 NA non-coding upstream 625948 7915351 ~ 7916387 (-)
XLOC_016159 NA non-coding upstream 1201185 8490588 ~ 8494716 (-)

Expression


Co-expression Network