XLOC_016146


Basic Information

Item Value
gene id XLOC_016146
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7402491 ~ 7431590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033765
acaaattagccactaaatctaaaagttacgaattgctgtgagattgcgttggaggTTCAGGCAGTGAGAATCAACATCATCATTgctgtttaattaaatattttacattgctgtaaaaattaaatatttaaaaataaaaacatttcacaattagGATCCATTTgataacattaacattaactaacattaattaaaacCGTATTATAAAGTACTACAGTAGCATTTTATTGAGAAATACTTTCAGAACCTCCATAAGAGAACCACTGCAATGTATCGTACACGCCACTCTGCAGCAGCAGAATTTACCTCCATGTTTGCACACCCTAATACTGCAATGTAGCATGACATGGATCATACATGACATTTAACTGTGTACAATCGATGTGAACTTCCATACGACTCGAGTTATTCGCTCTCTCTGTGCACCATGACACTATTGTGACTCCTTTGCCAGCTGGAGATGTTATTAAAGTGAACTCTTGTAGGATTCACGCTGGCAAAGTTTAGGTTTTGTTATTACTCTCGATATTTTTCAAACCTTGTAAAGCGAGGAGCATATCTACAGTTAAGTAGACCTGTGTAGAGATGCTtaaaattg
>TCONS_00031862
GTTTGCAGTGCACATCACGCCGAAAGAACATTGCCAGGACGTACAGTCAAAGTTCTGAGTACGTTCCCTGCTGCCTTGGTGTGATTCGGCCAGTTGCTCCGCCATAGTAGATCGATTCGGAGTGTTGATTGGCAGCAGCTCGTGTTTCTCAGCGCTGTGATGGATGAGATGAGACTTTGGCTCTTGGTTTTCTCCTCGAGCTGATTGAGGACTGCTCGTGTGGGCGTGGATGAGTTCTGTTCTGCCTTTATAAACGGGGAGAATGGGCTCTACCAACCATCTCACTTGTTGATCTCTATCAATCTATCAGAGGACAGAATAAGGAGACTCACTTCATAAAAACTCCCCTTTATCAGGTCGGAAAATGACGACGGCGGTGCTGAAAGGATTTGTGCTCTTCATCTGCTTGTTCTTCACAGTAGTTCAGTCCATCACATGCGAAGCCAGCAAGATAGAATCGCGCAAAAAGCATGAAAACGACGTGGCGCACCAAGGATCTGCTATTACAACAGGAGTGTGGAATCAGGAGAAACCAAAGAGACTCTTTGCCAGAACTCGCTACCTGTCTCAGCAGAGACATCATGGGGCGAGACCTAAGCCCAGGCCCGAGGCGGTTTCCCCAGCCCAGACTCCAGCGCGCCGCTGTGCCGGTCTGACGGAGAGCTGCTCTTCGCTCACTCCCTGCTGCGATCCATGTGCTTCCTGCCACTGCCGGCTCTTCAACACCATCTGCCACTGCTGGAGACTGGGACACCTTTGCCCCAAGAAGACCTAATCACCCCAAACACGCACACGTATACTTACTTATTGGTGGTTCTCAGCTGCTTTTACTTCAGCGTTGATTGCGCAATACATGTGCTTTATCTTGCAACAACAAAAATGGttttacacatacagttgaaatcagaattattagctcctctgtatattttccccccaatttctgtgtatcggaaacacgtttctaaacaatactttcaataactaatttataattcAACTTTTATCattgccataatgacagcacatagcTGCAAGCTTTGAGTGACATTACAAGGCTTAGAATCATTATATAACAGTGTTTTGATCTGTAGACATTCAAAAAGTAATATTTCTTAAGGGGGCCAATAACGTTGAGCCTTTTTTAGGGTTAATTTTTAGGGtttcattaaaaactgcttttattttagccaatataattcaaataagactttctcaagaagaaaaaaatattataggaaatactgtggaaaattccttgctctgttaaacaacatttggaaaatatctgaaaaagaaaagtCACAGGAGAGCTGAAAGTTTTGACTTCAGTTGTATGTCACTGTTAGTCTGGTAACACATTCCATCAAGGTTCCATTGGGAAAAACTCGAGTTAATGTTAATCCAGCTTGTACTAATGCATTACTCAAATTTAAAAGTTGACTTAACTTTACCtgacaacaaacattttttattattgtgcatttaaactaacagatgcttgttgtgttaccataaaggttaaaaaatatcAACTGTTTTTTATATCTAACAACAGCTGTCTAAGCTGATTAGCTTGAACCAATATTAATTTGTGGCAAAATGCTGAATGAAGAATGATTTCTAAAAGTTCCAAGTTGAACTTGGGCGGGGGGAGGGggactcctgggaaaaacaggagtgttggcaggtatggtttaCACAGACGATAACAGTAACGTTTGATATAAAAAAAACCCCACATTAATTAAACATTACCCACATTAAAACCGTTATtgtgaacataaacaaaacaGATCACTTTCTTAACCTAAATACATTCAGTTGTATTAACAAACCTACTTTGTATGTGGTAAATCATTTAGAACGCCTACGTTTAATGTGTATTAccaaacacaatctcacagcaattcgtagttgtggttaatttgtattaatttgtatgatctcatttgtacattttagtatgatttgctcaccTCCCAATAAGGGGTAGGATTTGGGGTGGCATTTGGAGGTATGACTCCtttaaaaatcacagttttcatatgaattagccaagTATTTTAGCATTTACTGATTGAaataaggcgaggcagtggcgcagtaggtagtgctatcgcctcagcaagaaggtcgctggttcgaacctcagctcagttggcgtttctgtgtggagtttgcatgttctccctgccttcgcgtgggcttcctccgggtgctccggtttcccccacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtgtgtgtgtggatgtttcccagagatgggttgcggctggaagggcatctgctgcgtaaaaacttgctggataagttggcggttcattccactgtagcgaccccggattaataaaggaactaagccgacaagaaaatgaatgaatgaatgattgaaataaGTAGCAGTTGAagattccagcctgatctcacgaggttacgttttgtcagtttagtggctaatttgtaagagttgagtcgtatgaaaatgtacgattttaaaaaggagaagtGGCacacaaccccacccctaaacccaaccgtctttgggtgatgagcaaatcgtactaaatagtacaaattagattgtatgaattcatacaaattagccactaaatctaaaagttacgaattgctgtgagattgcgttggaggTTCAGGCAGTGAGAATCAACATCATCATTgctgtttaattaaatattttacattgctgtaaaaattaaatatttaaaaataaaaacatttcacaattagGATCCATTTgataacattaacattaactaacattaattaaaacCGTATTATAAAGTACTACAGTAGCATTTTATTGAGAAATACTTTCAGAACCTCCATAAGAGAACCACTGCAATGTATCGTACACGCCACTCTGCAGCAGCAGAATTTACCTCCATGTTTGCACACCCTAATACTGCAATGTAGCATGACATGGATCATACATGACATTTAACTGTGTACAATCGATGTGAACTTCCATACGACTCGAGTTATTCGCTCTCTCTGTGCACCATGACACTATTGTGACTCCTTTGCCAGCTGGAGATGTTATTAAAGTGAACTCTTGTAGGATTCACGCTGGCAAAGTTTAGGTTTTGTTATTACTCTCGATATTTTTCAAACCTTGTAAAGCGAGGAGCATATCTACAGTTAAGTAGACCTGTGTAGAGATGCTGTTTCAAAATGTGCAGTAAATGTGAATCTGATGTTTTTCTCATACTGTGATCTTTTACTAGTACGATTTGAGATGCTTGTTTCTACTGTGATGACTCTACTGTAACCTCTCCATGTTTTCACTTTCTACACAAAACAACGTTCGTGTGGATGTCAAGCAAATGCATAAGTGTGAATGGAAAAACCTCTAGTATTATATATTTCTATCCATTGTCAGGTCATATTGACCGAATATTATtactaaacataaacaaacaaaagcgtTCAATGTCCTCTCAAcagatttatttgtaataaaaacatttagaacTGCTTTATGAGAACTTTCTTCAATGaagctctaaaaaaaaaaaaaaatcatgaaagtcatgattttatttgtttggtgccaaacgGGTTTAAATAACTATGCcacataattgttttttttttaccaaccctaaaacaaaaacacatgggAAAGAGTTACAAAGCAATAACAATGCAAGGGTGTCTGTttgcataaaactcgtagacgtGCTGTATTTAAGAGAATGAGATGAAAAAAAATGCCCTCAATTGTCTCCTGGGTTAACCGGTCGCAAACTGACCTATATGGTCTCATAGGTGAACCTGTCGGAGATCGGTCACGCATACCTGCGCTCTCAAGTTCAAGGCAGTAGTTCAAATCAGTAAATCTACCCACCATACAGGCAAAGTTCATCTCAAGCAAGAACAAAGGGGTGTCAGTGAGTTTGAATTAAAGGGGACACATCAAGCCCCTTTTCATAAGGTGTCAAATAAATCTTTGGTGTCCCCAGAATGGACAGTGAAGTTTCAGCTCGAAATACTAATAAGATTAGTTAGTACCTAGTCAAACCTCCctctattttgtttttctgtgtgaCCTTTTAATATTCAAACTGACATCTAGACTGGACCAGGACTTTACTGATGGGTTAGTGTTTACATTTATGTCATTTTTGACTGCTAGCATGTGACATTCTCTGTTCTGAGGCCTGCTGCATGAAGctggtgttacggtttaactggtgaccaTGTTAACTGGTGACACACTCCAGGGACgttaaccggtttcaaggtttaccacacttaggaaaagtcaaggttttaaaaccccaaaaatgttttgttatagcATTTCTAAggtacagttgtagtcagaactaatagcacccctgaattattagcccctttgtttatttttttccccaatttctgtttaacggagagattttttttcaacacatttctaaacaatagttttattaattcatttctaataacttatttcatctttgccatgatgacagtaaataatatttgactatatattcttcaagacacttctatacagcttaaagtgacatttaaaggcttaatgtgtttttcaaacaaatgaaaacagcagaagtcaatgatttatttgaattatttagcctgacatgtttactgttccaaaatattatgaatgtttcctaaaataaagtatattgtgttcaaagcggtaaaaggtttttttttttttttacccagacattttaaaagaacatattgtagagcagtaatcacaataccatgaatccgtgatatttttatctaaggatATCATACCATATGAAACTTTTGCCATGCCTACTCCAGAAgttaaatagttacattttcaCATTCTTGCCAGATCATATCTACAAAATATTCTCATAATAATTATATCTTTTTATTAATTGACGGCATTGGCATTATTGTGTCAATAATgagtttttcattatttttagtgGCAAAAGagcattaaactaaaaaaataaataaagcaataatattaattacaaccccaaatcaaaatGAGCTGGGACAGTacgggaa

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098657 import into cell biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055085 transmembrane transport biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04080 Neuroactive ligand-receptor interaction
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-150212-1 Enables type 1 melanocortin receptor binding activity. Acts upstream of or within negative regulation of cortisol secretion and pigmentation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; integument; muscle; and testis. Orthologous to human ASIP (agouti signaling protein).

Ensembl:

ensembl_id ENSDARG00000114760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033765 False 598 lncRNA 0.35 2 7402491 7422437
TCONS_00031862 True 5107 mRNA 0.38 3 7419986 7431590

Neighbor

gene id symbol gene type direction distance location
XLOC_016145 si:dkeyp-106c3.2 coding downstream 113088 7288097 ~ 7289403 (-)
XLOC_016144 zgc:153115 coding downstream 155643 7238549 ~ 7246848 (-)
XLOC_016143 rc3h1b coding downstream 212897 7149588 ~ 7189594 (-)
XLOC_016142 extl2 coding downstream 270800 7120582 ~ 7131691 (-)
XLOC_016141 AL953893.1 coding downstream 321566 7080302 ~ 7080925 (-)
XLOC_016147 FO203364.1 coding upstream 56002 7487592 ~ 7494464 (-)
XLOC_016148 NA coding upstream 115096 7546686 ~ 7548019 (-)
XLOC_016149 CABZ01021599.1 coding upstream 170406 7601996 ~ 7605121 (-)
XLOC_016150 CABZ01021592.1 coding upstream 232352 7663942 ~ 7666021 (-)
XLOC_016151 CCDC39 coding upstream 236983 7668573 ~ 7696503 (-)
XLOC_016139 CU694525.1 non-coding downstream 483175 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding downstream 493810 6908662 ~ 6908681 (-)
XLOC_016138 CABZ01077605.1 non-coding downstream 636084 6766293 ~ 6766407 (-)
XLOC_016123 NA non-coding downstream 1561997 5838896 ~ 5840494 (-)
XLOC_016156 NA non-coding upstream 483761 7915351 ~ 7916387 (-)
XLOC_016159 NA non-coding upstream 1058998 8490588 ~ 8494716 (-)
XLOC_016162 CT027589.1 non-coding upstream 1202650 8634240 ~ 8635132 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_00467911_00469949 AGRP2 misc CI01000004 null 467802 ~ 471846 (+)