XLOC_016152 (dcun1d1)


Basic Information

Item Value
gene id XLOC_016152
gene name dcun1d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7698446 ~ 7711522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031868
ATGTCACTGCGCATGAGCGGAAATAGGTACAGTGCAGAGAGGGATAGCGGAAGAGGGAGTCTGGAAATCACAAACATgAACAAGCTGAAATCCTCTCAGAAGGATAAAGTTCGCCAGTTCATGATCTTTACCCAGTCAAACGAGAAAACAGCACTCAATTGTTTGTCTCAGAATGATTGGAAACTAGACGTTGCTACAGACAACTTTTTCCAACATCCCGACCTCTACGTACAGAATCTAAAGGGAACACTAGACCGCAAAAAGTTAGAACAGCTCTATAATCGGTACAGAGACCCTCAAGATGACAACAAGATCGGTATAGATGGGATCCAGCAATTCTGTGATGATTTAGGACTTGATCCAGCCAGTATAAGTGTACTGCTAATCGCTTGGAAGTTTCGAGCCGCAACACAGTGCGAGTTTTCCAAACAAGAATTCATGGAGGGAATGGCTGAACAAGGGTGTGACAGCATAGAAAAACTCAAGGCACAGCTACCCAGGATGGAGCAAGAGTTGAAGGATCAAGGGAAATTTAAAGACTTCTATCAGTTCACATTTAACTTTGCTAAGAATCCAGGACAGAAGGGCTTAGACCTAGAAATGGCAATTGCATACTGGAATTTAATATTGGCTGGACGTTTTAAATTTCTAGATCTATGGAACAAATTTTTATTGGAGCATCATAAGCGATCCATTCCCAAAGACACATGGAACCTTTTGTTAGATTTCAGCACGATGATCACAGATGATATGTCAAACTACGACGAGGAGGGAGCCTGGCCAGTTCTTATTGATGATTTTGTGGAGTTTGCGCGGCCGTGCATCGGCACCAAGAGTACAGCTGTATGAGTACATTCCTTCAGAGGGACTTCTGGACCTCATTGAAAACAAACAGCTTCTGCTGAGCACAGAAGACTGAACTGAGATCTGCATTGCCTTTTCCAAGCCCTCAGGACTGAGACATTTATACAAACCAGAGACATTAAAGGCGTCTTTTCTCTTCAGTCATCTAATGGTGGTTTGGGCTTTTGTCTTTTTGGGCCATTTTTGTTTTCTCTTCGTACAGGATTGTATTGAATCTGGCACTTCTTCAGTGGTCTCATTCAGATGAAGCGGTTTGTTGAGCAAGCTCCGACAGATACAGTTAGGAAATGTCAAAACCTTAATTTTAATAACTCCATGTGCATTCTCGctttgaatgtttgtttgtttttttctttccatttggtttTTATGAAAATTATATGTCAAGCGTTGTTTGAttgttctctttctctctttttttttataaaacagagAAGCTGGTGTCTTGAAAACCAGTCACATTTAACTTGTTTTATTGTGACGATGTACATTTTCTGTTGATATCCAGACAGTAACTTCAGCTTTGCGCGTTTGGTTTTGATTAAATCAATAGGTCATAActgaaaatgttatattttacaatcgtagaaataatattaattttgaaCCATACCTCAGTTTTCCTTGATTAATGACTCCATTTTGATGTATTGATATACTGTGTTTGCAGTTCATTCAGCACTTTGATAAGTCACATAATCCATATCATATAATCAGGTTATAGTTGATGAATAAAGTCAGATGGCcttgaaaa

Function

symbol description
dcun1d1 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D1 (defective in cullin neddylation 1 domain containing 1).

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0097602 cullin family protein binding molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0032182 ubiquitin-like protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5443 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D1 (defective in cullin neddylation 1 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000099642

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031868 True 1618 mRNA 0.39 7 7698446 7711522

Neighbor

gene id symbol gene type direction distance location
XLOC_016151 CCDC39 coding downstream 1943 7668573 ~ 7696503 (-)
XLOC_016150 CABZ01021592.1 coding downstream 32425 7663942 ~ 7666021 (-)
XLOC_016149 CABZ01021599.1 coding downstream 93325 7601996 ~ 7605121 (-)
XLOC_016148 NA coding downstream 150427 7546686 ~ 7548019 (-)
XLOC_016147 FO203364.1 coding downstream 203982 7487592 ~ 7494464 (-)
XLOC_016153 b3gnt5b coding upstream 37872 7749394 ~ 7757273 (-)
XLOC_016154 tbl1xr1b coding upstream 53149 7764671 ~ 7800702 (-)
XLOC_016155 si:ch211-38m6.7 coding upstream 120392 7831914 ~ 7845110 (-)
XLOC_016156 NA coding upstream 203829 7915351 ~ 7916387 (-)
XLOC_016157 ephb3a coding upstream 212442 7923964 ~ 8017579 (-)
XLOC_016146 NA non-coding downstream 266856 7402491 ~ 7431590 (-)
XLOC_016141 AL953893.1 non-coding downstream 617521 7080302 ~ 7080925 (-)
XLOC_016140 CU693440.1 non-coding downstream 789765 6908662 ~ 6908681 (-)
XLOC_016159 NA non-coding upstream 779066 8490588 ~ 8494716 (-)
XLOC_016162 CT027589.1 non-coding upstream 922718 8634240 ~ 8635132 (-)
XLOC_016165 NA non-coding upstream 1124400 8835922 ~ 8840884 (-)
XLOC_016169 CR385076.1 non-coding upstream 1695036 9406558 ~ 9406675 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_00311036_00314134 DCUN1D1, DCNL1 coding CI01000004 null 309804 ~ 314134 (+)