XLOC_016160 (si:ch211-71m22.1)


Basic Information

Item Value
gene id XLOC_016160
gene name si:ch211-71m22.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8586415 ~ 8611675 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031888
AGCACTTTGCTGCTTTTCACCATGGAAACCAACAATGGTAAGTGTGTCAGAAAGCTTATCAACAGTAACCTGATCCTAGCAACACTGTGTTAAATAGCTTTTACAGTATGTAATTCAAGGAAAATACTCTTGCACAGTTTCAATTTGTCTTGTTTGATACTTTTTAAAGCAGGCTACCCAGTTGAGCTTCAaccaaataaaaatgcaattcacCCTGCCCCTGGATATGGTCAAGGAGCCGCCATACCAGGCCATGGTCAAGTGGTTATGATGCCAGTTCCACAGAGACCTGATGGCTGTCCACCAGGACTGGAGTACCTGACTCAGATCGATCAACTTCTAGTGCAGCAGAAAGTTGAGCTGGCTGAAgTTATCTTGGGCTGGGAGACCAATAACAAATACATTGTCAAGAACAGTATGGGGCAGCAGGTGTTCTATGTGGCTGAGGAAAACGACTGCTGCAACAGACAGTTCTGTGGGCCGCTGCGCTCTTTCGTTATCCATGTTCAGGATAACTTGGGACAGGAAGTGATGAGACTTATGCGTCCTTTGAAGTGTGGAAGCTGCTTCTGCCCCTGTTGCCTCCAGGAGCTTGAAATCCAAAGTCCACCAGGCTACCCGATTGGATACGTGATCCAGAATTGGCATCCATTCCTTCCCAAATTTACCATTCAGAATGAGAAAAAAGAAGCTGTTTTGAAGATTGAAGGACCGTTCTGTTCATGCAGATGTTGTTCGGATGTGAACTTTGATGTTTTGTCTTTAGATGAATCCACAAAGGTGGGCAAAATTTCTAAACAGTGGACAGGTCTGGTGAGAGAAGCTTTCACAGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGATGTGAAGATCAAAGCTGTGCTTTTTGGAGCATGTTTCCTCATAGACTTCATGTTCTTTGAACACAATAAATGAGTGATCATTCTTTGGATGCCATATTGAATTTTGACCTTCTTGTTTGTGATGTCCTTGATACACCACTAGGTGACAGCAATTGCCTTTACAATAACGCTAGGATCTTAACATCAACAAAGAACCAACTCTGTGAAAGGATTTGCCAAACTGTCAATGTTCAAGATATGTTATACAATATAGGCCAAGTTGTAACAAGCAAgttgccattcattcattttggttCCTTTTTTCATATGTAGTTTACTGGCCAGTGCTcataatgtttaatataatataatccatGCTACACTGAAAAAGTGGTAACCTAAAAACTAAATTAACCAAttgtatcatatcatattatatatagaCTAAGTATATTCTTCCTCAAGTATTGAaaagataagaaaaaaataagaaatatttaagGTAATATATGTTAAGTAAACACTGTTTGCATTCAGTGTATTGATAGATGATTATAGGTGATGAAAGTTATAATCAAAcattttattctgtaaaaaaaaactgtgaacaaacacaataaatatatacaaatatccaataattattcttatttttgtgAATAACACTTACAGTTTCATTTTGCACCTATGCTGTCTTATTCCTGAAGTGCTCTTCATCGCCTCATTATGCCTTCTTAGAAGTTAAGGAGGCATTAGATAATGAATAAcactttcactttttttctaCCTTTGCTTTCTTGCTAGTTTGCATGTTGCTCAGCAACAACACCTCATTTACACTCCATAAGAAGAGAAACCTCAAGAGGTAACATACGAAATggtgcttgaaaaaaaaaaagcccttagCCTTATCCCAAgtcaattaaaaaagaaatatctgTGGGCTTTCactaaaatacataaacataagTCACTGTATTTTCTACATTAAATGTAATATTCTGACTTTATTATTTATACTTGatattttaaatgtcacgttGTGCCTTGATATCCATTAACATGGCTTTGTTTCTCATAATTTCAGCTTTACATCTCAcattaaacgttttttttttttttttgcacattgaaACTataggtttcttttttttttgacttaaagagattgttc
>TCONS_00031887
AGCACTTTGCTGCTTTTCACCATGGAAACCAACAATGGTAAGTGTGTCAGAAAGCTTATCAACAGTAACCTGATCCTAGCAACACTGTGTTAAATAGCTTTTACAGTATGTAATTCAAGGAAAATACTCTTGCACAGTTTCAATTTGTCTTGTTTGATACTTTTTAAAGCAGGCTACCCAGTTGAGCTTCAaccaaataaaaatgcaattcacCCTGCCCCTGGATATGGTCAAGGAGCCGCCATACCAGGCCATGGTAAAGGAATCTAAGATAACTTTGATTGATCAAAATTGTATTTCATGGATCCTAAAGATTAACACAGTGTGTTCTTTCTTTCCTAGGTCAAGTGGTTATGATGCCAGTTCCACAGAGACCTGATGGCTGTCCACCAGGACTGGAGTACCTGACTCAGATCGATCAACTTCTAGTGCAGCAGAAAGTTGAGCTGGCTGAAgTTATCTTGGGCTGGGAGACCAATAACAAATACATTGTCAAGAACAGTATGGGGCAGCAGGTGTTCTATGTGGCTGAGGAAAACGACTGCTGCAACAGACAGTTCTGTGGGCCGCTGCGCTCTTTCGTTATCCATGTTCAGGATAACTTGGGACAGGAAGTGATGAGACTTATGCGTCCTTTGAAGTGTGGAAGCTGCTTCTGCCCCTGTTGCCTCCAGGAGCTTGAAATCCAAAGTCCACCAGGCTACCCGATTGGATACGTGATCCAGAATTGGCATCCATTCCTTCCCAAATTTACCATTCAGAATGAGAAAAAAGAAGCTGTTTTGAAGATTGAAGGACCGTTCTGTTCATGCAGATGTTGTTCGGATGTGAACTTTGATGTTTTGTCTTTAGATGAATCCACAAAGGTGGGCAAAATTTCTAAACAGTGGACAGGTCTGGTGAGAGAAGCTTTCACAGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGATGTGAAGATCAAAGCTGTGCTTTTTGGAGCATGTTTCCTCATAGACTTCATGTTCTTTGAACACAATAAATGAGTGATCATTCTTTGGATGCCATATTGAATTTTGACCTTCTTGTTTGTGATGTCCTTGATACACCACTAGGTGACAGCAATTGCCTTTACAATAACGCTAGGATCTTAACATCAACAAAGAACCAACTCTGTGAAAGGATTTGCCAAACTGTCAATGTTCAAGATATGTTATACAATATAGGCCAAGTTGTAACAAGCAAgttgccattcattcattttggttCCTTTTTTCATATGTAGTTTACTGGCCAGTGCTcataatgtttaatataatataatccatGCTACACTGAAAAAGTGGTAACCTAAAAACTAAATTAACCAAttgtatcatatcatattatatatagaCTAAGTATATTCTTCCTCAAGTATTGAaaagataagaaaaaaataagaaatatttaagGTAATATATGTTAAGTAAACACTGTTTGCATTCAGTGTATTGATAGATGATTATAGGTGATGAAAGTTATAATCAAAcattttattctgtaaaaaaaaactgtgaacaaacacaataaatatatacaaatatccaataattattcttatttttgtgAATAACACTTACAGTTTCATTTTGCACCTATGCTGTCTTATTCCTGAAGTGCTCTTCATCGCCTCATTATGCCTTCTTAGAAGTTAAGGAGGCATTAGATAATGAATAAcactttcactttttttctaCCTTTGCTTTCTTGCTAGTTTGCATGTTGCTCAGCAACAACACCTCATTTACACTCCATAAGAAGAGAAACCTCAAGAGGTAACATACGAAATggtgcttgaaaaaaaaaaagcccttagCCTTATCCCAAgtcaattaaaaaagaaatatctgTGGGCTTTCactaaaatacataaacataagTCACTGTATTTTCTACATTAAATGTAATATTCTGACTTTATTATTTATACTTGatattttaaatgtcacgttGTGCCTTGATATCCATTAACATGGCTTTGTTTCTCATAATTTCAGCTTTACATCTCAcattaaacgttttttttttttttttgcacattgaaACTataggtttcttttttttttgacttaaagagattgttc
>TCONS_00031886
AGCACTTTGCTGCTTTTCACCATGGAAACCAACAATGGTAAGTGTGTCAGAAAGCTTATCAACAGTAACCTGATCCTAGCAACACTGTGTTAAATAGCTTTTACAGTATGTAATTCAAGGAAAATACTCTTGCACAGTTTCAATTTGTCTTGTTTGATACTTTTTAAAGCAGGCTACCCAGTTGAGCTTCAaccaaataaaaatgcaattcacCCTGCCCCTGGATATGGTCAAGGAGCCGCCATACCAGGCCATGGTAAAGGAATCTAAGATAACTTTGATTGATCAAAATTGTATTTCATGGATCCTAAAGATTAACACAGTGTGTTCTTTCTTTCCTAGGTCAAGTGGTTATGATGCCAGTTCCACAGAGACCTGATGGCTGTCCACCAGGACTGGAGTACCTGACTCAGATCGATCAACTTCTAGTGCAGCAGAAAGTTGAGCTGGCTGAAgTTATCTTGGGCTGGGAGACCAATAACAAATACATTGTCAAGAACAGTATGGGGCAGCAGGTGTTCTATGTGGCTGAGGAAAACGACTGCTGCAACAGACAGTTCTGTGGGCCGCTGCGCTCTTTCGTTATCCATGTTCAGGATAACTTGGGACAGGAAGTGATGAGACTTATGCGTCCTTTGAAGTGTGGAAGCTGCTTCTGCCCCTGTTGCCTCCAGGAGCTTGAAATCCAAAGTCCACCAGGCTACCCGATTGGATACGTGATCCAGAATTGGCATCCATTCCTTCCCAAATTTACCATTCAGAATGAGAAAAAAGAAGCTGTTTTGAAGATTGAAGGACCGTTCTGTTCATGCAGATGTTGTTCGGATGTGAACTTTGATGTTTTGTCTTTAGATGAATCCACAAAGGTGGGCAAAATTTCTAAACAGTGGACAGGTCTGGTGAGAGAAGCTTTCACAGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGATGTGAAGATCAAAGCTGTGCTTTTTGGAGCATGTTTCCTCATAGACTTCATGTTCTTTGAACACAATAAATGAGTGATCATTCTTTGGATGCCATGTAAGTACATTTCAACTGCATATAGATGTTTGTTCATCATGATGATTTGTAAACACACAGTTCTAATTGTCTTTCAATTGGTATTTCAGATTGAATTTTGACCTTCTTGTTTGTGATGTCCTTGATACACCACTAGGTGACAGCAATTGCCTTTACAATAACGCTAGGATCTTAACATCAACAAAGAACCAACTCTGTGAAAGGATTTGCCAAACTGTCAATGTTCAAGATATGTTATACAATATAGGCCAAGTTGTAACAAGCAAgttgccattcattcattttggttCCTTTTTTCATATGTAGTTTACTGGCCAGTGCTcataatgtttaatataatataatccatGCTACACTGAAAAAGTGGTAACCTAAAAACTAAATTAACCAAttgtatcatatcatattatatatagaCTAAGTATATTCTTCCTCAAGTATTGAaaagataagaaaaaaataagaaatatttaagGTAATATATGTTAAGTAAACACTGTTTGCATTCAGTGTATTGATAGATGATTATAGGTGATGAAAGTTATAATCAAAcattttattctgtaaaaaaaaactgtgaacaaacacaataaatatatacaaatatccaataattattcttatttttgtgAATAACACTTACAGTTTCATTTTGCACCTATGCTGTCTTATTCCTGAAGTGCTCTTCATCGCCTCATTATGCCTTCTTAGAAGTTAAGGAGGCATTAGATAATGAATAAcactttcactttttttctaCCTTTGCTTTCTTGCTAGTTTGCATGTTGCTCAGCAACAACACCTCATTTACACTCCATAAGAAGAGAAACCTCAAGAGGTAACATACGAAATggtgcttgaaaaaaaaaaagcccttagCCTTATCCCAAgtcaattaaaaaagaaatatctgTGGGCTTTCactaaaatacataaacataagTCACTGTATTTTCTACATTAAATGTAATATTCTGACTTTATTATTTATACTTGatattttaaatgtcacgttGTGCCTTGATATCCATTAACATGGCTTTGTTTCTCATAATTTCAGCTTTACATCTCAcattaaacgttttttttttttttttgcacattgaaACTataggtttcttttttttttgacttaaagagattgttc
>TCONS_00031889
ATCATACCGAAACATAAAGCATTTAGAGTAATAACTGCCGGATTGTTTTCCTCTTTCGTTTTTGTAAGGGGTGTGTTCGCGAGCATATGTTTCCCGGGAAGGAAACAGTGAGGCAGATAAAGAGCGAGGAGAAAACTGTGTGACCGTCGCCCATTAAATGActgaaacaagtaaataaaaagtactaACCGACAGCCTTAGGAGAGGATATTGGTGGGGAATATCAAATTAAAGAACAAGACGAGACGGCATCCTCTTTAAATAGAGCACTTTGCTGCTTTTCACCATGGAAACCAACAATGCAGGCTACCCAGTTGAGCTTCAaccaaataaaaatgcaattcacCCTGCCCCTGGATATGGTCAAGGAGCCGCCATACCAGGCCATGGTCAAGTGGTTATGATGCCAGTTCCACAGAGACCTGATGGCTGTCCACCAGGACTGGAGTACCTGACTCAGATCGATCAACTTCTAGTGCAGCAGAAAGTTGAGCTGGCTGAAgTTATCTTGGGCTGGGAGACCAATAACAAATACATTGTCAAGAACAGTATGGGGCAGCAGGTGTTCTATGTGGCTGAGGAAAACGACTGCTGCAACAGACAGTTCTGTGGGCCGCTGCGCTCTTTCGTTATCCATGTTCAGGATAACTTGGGACAGGAAGTGATGAGACTTATGCGTCCTTTGAAGTGTGGAAGCTGCTTCTGCCCCTGTTGCCTCCAGGAGCTTGAAATCCAAAGTCCACCAGGCTACCCGATTGGATACGTGATCCAGAATTGGCATCCATTCCTTCCCAAATTTACCATTCAGAATGAGAAAAAAGAAGCTGTTTTGAAGATTGAAGGACCGTTCTGTTCATGCAGATGTTGTTCGGATGTGAACTTTGATGTTTTGTCTTTAGATGAATCCACAAAGGTGGGCAAAATTTCTAAACAGTGGACAGGTCTGGTGAGAGAAGCTTTCACAGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGATGTGAAGATCAAAGCTGTGCTTTTTGGAGCATGTTTCCTCATAGACTTCATGTTCTTTGAACACAATAAATGAGTGATCATTCTTTGGATGCCATATTGAATTTTGACCTTCTTGTTTGTGATGTCCTTGATACACCACTAGGTGACAGCAATTGCCTTTACAATAACGCTAGGATCTTAACATCAACAAAGAACCAACTCTGTGAAAGGATTTGCCAAACTGTCAATGTTCAAGATATGTTATACAATATAGGCCAAGTTGTAACAAGCAAgttgccattcattcattttggttCCTTTTTTCATATGTAGTTTACTGGCCAGTGCTcataatgtttaatataatataatccatGCTACACTGAAAAAGTGGTAACCTAAAAACTAAATTAACCAAttgtatcatatcatattatatatagaCTAAGTATATTCTTCCTCAAGTATTGAaaagataagaaaaaaataagaaatatttaagGTAATATATGTTAAGTAAACACTGTTTGCATTCAGTGTATTGATAGATGATTATAGGTGATGAAAGTTATAATCAAAcattttattctgtaaaaaaaaactgtgaacaaacacaataaatatatacaaatatcc

Function

symbol description
si:ch211-71m22.1 Predicted to enable phospholipid scramblase activity. Acts upstream of or within cilium assembly. Located in cytoplasm. Orthologous to human PLSCR1 (phospholipid scramblase 1); PLSCR2 (phospholipid scramblase 2); and PLSCR5 (phospholipid scramblase family member 5).

GO:

id name namespace
GO:0017121 plasma membrane phospholipid scrambling biological_process
GO:0044782 cilium organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017128 phospholipid scramblase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-193 Predicted to enable phospholipid scramblase activity. Acts upstream of or within cilium assembly. Located in cytoplasm. Orthologous to human PLSCR1 (phospholipid scramblase 1); PLSCR2 (phospholipid scramblase 2); and PLSCR5 (phospholipid scramblase family member 5).

Ensembl:

ensembl_id ENSDARG00000058638

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031888 False 2025 mRNA 0.36 8 8586415 8609653
TCONS_00031887 False 2111 mRNA 0.36 7 8586415 8609653
TCONS_00031886 False 2200 mRNA 0.36 6 8586415 8609653
TCONS_00031889 True 1620 mRNA 0.39 10 8586953 8611675

Neighbor

gene id symbol gene type direction distance location
XLOC_016159 NA coding downstream 91699 8490588 ~ 8494716 (-)
XLOC_016158 pls1 coding downstream 475069 8059957 ~ 8111346 (-)
XLOC_016157 ephb3a coding downstream 568836 7923964 ~ 8017579 (-)
XLOC_016156 NA coding downstream 670028 7915351 ~ 7916387 (-)
XLOC_016155 si:ch211-38m6.7 coding downstream 741305 7831914 ~ 7845110 (-)
XLOC_016161 si:ch211-71m22.5 coding upstream 6141 8617816 ~ 8636175 (-)
XLOC_016162 CT027589.1 coding upstream 22565 8634240 ~ 8635132 (-)
XLOC_016163 si:ch211-71m22.3 coding upstream 32747 8644422 ~ 8648440 (-)
XLOC_016164 miga1 coding upstream 51433 8663108 ~ 8688759 (-)
XLOC_016165 NA coding upstream 224247 8835922 ~ 8840884 (-)
XLOC_016148 NA non-coding downstream 1038396 7546686 ~ 7548019 (-)
XLOC_016147 FO203364.1 non-coding downstream 1091951 7487592 ~ 7494464 (-)
XLOC_016146 NA non-coding downstream 1154825 7402491 ~ 7431590 (-)
XLOC_016169 CR385076.1 non-coding upstream 794883 9406558 ~ 9406675 (-)
XLOC_016176 CU633992.1 non-coding upstream 1076380 9688055 ~ 9688185 (-)
XLOC_016178 NA non-coding upstream 1134762 9746437 ~ 9748216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_02551541_02556812 NA coding CI01000003 null 2551541 ~ 2556836 (+)