XLOC_016161 (si:ch211-71m22.5)


Basic Information

Item Value
gene id XLOC_016161
gene name si:ch211-71m22.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8617816 ~ 8636175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031890
tactgAGGAGCATTGCGTTCTCATCATGTTTTTGCAAGGTCAGACAGAAGGTGTAAATGCTCCTGGAGTCAATGTGCCCATGCCCCCTGTGTATACCATTGGTCATCCTCCTGGAGTAAATGAGGTTTACACTACACCACCAACAGGTTATGTGGCGCCTCAGGTACCGGCAGTTATGCCAGTCTTGGACAGACCCATGGGCTGTCCTGTTGGTCTAGAGTACCTAACCCAGGTTGACCAGCTTCTAGTTCATCAGAAAGTGGAACTAATGGAAGTACTCATGGGATGGGAGACCAATAATCAATATGTGGTGAAAAACAGTTTAGGGCAGCAGGTGTTTTTTGCCGCTGAGGAGAGCCATTTTTGCAGTCGTATGTTTTGTGGATCTGTGCGTTCCTTCCTGCTACATATCCAGGATAACATGGGACAGGAAGTGATGACTTTATCTCGTCCCCTTAAGTGCAGTAGTTGCTTCTTCCCTTGCTGTCTTCAAGAGCTGGAGGTTCATAGCCCTTCAGGCAGCCCTCTTGGTTATGTTACACAAAGCTGGCATCCTTATCTGCCAAAGTTTATCATTCATAATGAGAGAAAAGAACCAGTTCTGAAGATTTTGGGACCGTTTTGTGACTGCAAATGTTGTTCTGATGTTAATTTTGAGGTGATGTCACTGGATGAGTCCTCAGTGATTGGTCGAATTAGCAAACAGTGGTCGGGATTTGAGGCAGAAGCTTTTACGGATGCAGACAACTTTGGCCTACAATTTCCAATGGATTTGGATgtgaaaataaaagcagttatattGGGAGCCTGCTTTCTTATCGATTTCATGTTTTTTGAGCACACTCAAAAACAAGAGTGA
>TCONS_00031891
CAAACAATCACTGGTAGGCCTACTAAATGTTATGTGGCGCCTCAGGTACCGGCAGTTATGCCAGTCTTGGACAGACCCATGGGCTGTCCTGTTGGTCTAGAGTACCTAACCCAGGTTGACCAGCTTCTAGTTCATCAGAAAGTGGAACTAATGGAAGTACTCATGGGATGGGAGACCAATAATCAATATGTGGTGAAAAACAGTTTAGGGCAGCAGGTGTTTTTTGCCGCTGAGGAGAGCCATTTTTGCAGTCGTATGTTTTGTGGATCTGTGCGTTCCTTCCTGCTACATATCCAGGATAACATGGGACAGGAAGTGATGACTTTATCTCGTCCCCTTAAGTGCAGTAGTTGCTTCTTCCCTTGCTGTCTTCAAGAGCTGGAGGTTCATAGCCCTTCAGGCAGCCCTCTTGGTTATGTTACACAAAGCTGGCATCCTTATCTGCCAAAGTTTATCATTCATAATGAGAGAAAAGAACCAGTTCTGAAGATTTTGGGACCGTTTTGTGACTGCAAATGTTGTTCTGATGTTAATTTTGAGGTGATGTCACTGGATGAGTCCTCAGTGATTGGTCGAATTAGCAAACAGTGGTCGGGATTTGAGGCAGAAGCTTTTACGGATGCAGACAACTTTGGCCTACAATTTCCAATGGATTTGGATgtgaaaataaaagcagttatattGGGAGCCTGCTTTCTTATCGATTTCATGTTTTTTGAGCACACTCAAAAACAAGAG

Function

symbol description
si:ch211-71m22.5 Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0017121 plasma membrane phospholipid scrambling biological_process
GO:0005886 plasma membrane cellular_component
GO:0017128 phospholipid scramblase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130531-65 Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000091266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031890 False 859 mRNA 0.45 9 8617816 8636175
TCONS_00031891 True 738 mRNA 0.44 7 8617819 8631805

Neighbor

gene id symbol gene type direction distance location
XLOC_016160 si:ch211-71m22.1 coding downstream 6141 8586415 ~ 8611675 (-)
XLOC_016159 NA coding downstream 123100 8490588 ~ 8494716 (-)
XLOC_016158 pls1 coding downstream 506470 8059957 ~ 8111346 (-)
XLOC_016157 ephb3a coding downstream 600237 7923964 ~ 8017579 (-)
XLOC_016156 NA coding downstream 701429 7915351 ~ 7916387 (-)
XLOC_016163 si:ch211-71m22.3 coding upstream 8247 8644422 ~ 8648440 (-)
XLOC_016164 miga1 coding upstream 26933 8663108 ~ 8688759 (-)
XLOC_016165 NA coding upstream 199747 8835922 ~ 8840884 (-)
XLOC_016166 ak5 coding upstream 209665 8845840 ~ 9059955 (-)
XLOC_016167 st6galnac5a coding upstream 524772 9160947 ~ 9260002 (-)
XLOC_016148 NA non-coding downstream 1069797 7546686 ~ 7548019 (-)
XLOC_016147 FO203364.1 non-coding downstream 1123352 7487592 ~ 7494464 (-)
XLOC_016146 NA non-coding downstream 1186226 7402491 ~ 7431590 (-)
XLOC_016169 CR385076.1 non-coding upstream 770383 9406558 ~ 9406675 (-)
XLOC_016176 CU633992.1 non-coding upstream 1051880 9688055 ~ 9688185 (-)
XLOC_016178 NA non-coding upstream 1110262 9746437 ~ 9748216 (-)
XLOC_016181 BX470264.1 non-coding upstream 1226658 9862833 ~ 9863388 (-)

Expression


Co-expression Network