XLOC_016165


Basic Information

Item Value
gene id XLOC_016165
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8835922 ~ 8840884 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033774
GAAAGACTTCTCACATACTTTTATTTCCACAGTTCTCCTCTAACAattttttgtacattatttaAGAACAGATTGTTATACACAGATACTGAAGCAGGTCAAGGGAGGGGAGGTGAATAGAACAGAACCCATTACAAAATGGTCTACTTAAAGCACAACAAAATGCATGTGTATAAAAGAACAGGGCAGCAGCGCGCGTGTGCGACGGCTGCCCCCAACTCGattctcatttgtttttgtttttttttcatcgtcttttttaaatagattaataaaaatacaatctttTCATGGACTGTGAGGAAACTGCGAAAATTAGAGGGATCTAAAGGCGTGATGATGGCTGGGCAAACGACTGCCACGAGTTCTTCATTTTCTTCTAAAACAAGTGGCCAGGTTTGAATCAAGTGGACAGGAAAgggggaagagaaaaaaaaatggcacACGGCAACTACCACTGGCTACTTTTCACCATATATTTGAATACTCCACATGTTCAACGACAGTACACAttgagagaaaagaaaagaaagctcTCCACGTGTGCAGAGAGTGCAAGAACGCCGTCCGGATCTCAGCTGGTCTTCTCCGTGCTGTAGTGCTTCAAGGTAAGTGGAGTGGgttgttttctttctttgaaatcgccatttaaaaaacaagaaatgaatgtaaataaagTGACAACATCATGTAACGGTTGTAAGAGGAAATAAAGAGCAGCTTCTAGTGAAAATGGTAGCCCATGgcaagagacacacacacacacacacacacacacacaaaccgggTCTGTCTGTCAGCTAGGATTTTTTCCCCCCCGTTCAGAACGTCGGAATTGCGAACGAACCTCCGTGATTGGTTCAAAACCTGGTATGAATCAAAGACATCAGCACCAAGTTCCTTTCCTTGCATCACAAAAAGAGCTCAAGCACAAATCTGGACTTATAAATATTTCAACTACAGACGACATTTTGCACTTTATCTTGAGCCTCTCTTCAGAATTCAGCTCCTCGGAGACGTTCCTCTCTGACAGCCGTCACTCAGGCGGCAGAACAAAGGGAGACACATCGGGTTGCCTTCGAAATGTCCTGGGATTGGGAATGTCGGTGTGCCttttcgttcattcgttcgtgcGTTCTTCTCACTTCTTTTGATTTGAGATAGTGTTACTTGACGAGACCTGGTAAGGTTTGACACCCACGGCTGGGTGTTGCCCCCTCCCTCCCACAAACCctcccccaccccacccccctcTGGCAGCGGTTCGGGGCGAGGTGCGGCCCGTCTGCGGTACCCTCTCGCCCAGACGTAAGCATTTCTTGACTTGGATGATGGAGCCATGCACAGAATGCCCTGGGGGCTGCAGGCCAGCCCTGAATAGTAGCGCTGGAGCTTGTCCCTGTCATCTGTTGGCAGGGAAGTAGTTGGGGTCCAGGTAGTTATAGCCTGTGCTTTGCGGTAAGCAGTAGTCTTTGTCCAGGAAGGTTTCGGCCTGGCAAACCGTCAGAGCAGGTACTGCAGAAGTCCACGGCGTTGTCCTGCG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033774 True 1543 lncRNA 0.47 2 8835922 8840884

Neighbor

gene id symbol gene type direction distance location
XLOC_016164 miga1 coding downstream 147163 8663108 ~ 8688759 (-)
XLOC_016163 si:ch211-71m22.3 coding downstream 187482 8644422 ~ 8648440 (-)
XLOC_016161 si:ch211-71m22.5 coding downstream 199747 8617816 ~ 8636175 (-)
XLOC_016162 CT027589.1 coding downstream 200790 8634240 ~ 8635132 (-)
XLOC_016160 si:ch211-71m22.1 coding downstream 224247 8586415 ~ 8611675 (-)
XLOC_016166 ak5 coding upstream 4956 8845840 ~ 9059955 (-)
XLOC_016167 st6galnac5a coding upstream 320063 9160947 ~ 9260002 (-)
XLOC_016168 st6galnac3 coding upstream 489262 9330146 ~ 9489611 (-)
XLOC_016169 CR385076.1 coding upstream 565674 9406558 ~ 9406675 (-)
XLOC_016170 cope coding upstream 672276 9513160 ~ 9527210 (-)
XLOC_016159 NA non-coding downstream 341206 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 919535 7915351 ~ 7916387 (-)
XLOC_016148 NA non-coding downstream 1287903 7546686 ~ 7548019 (-)
XLOC_016147 FO203364.1 non-coding downstream 1341458 7487592 ~ 7494464 (-)
XLOC_016176 CU633992.1 non-coding upstream 847171 9688055 ~ 9688185 (-)
XLOC_016178 NA non-coding upstream 905553 9746437 ~ 9748216 (-)
XLOC_016181 BX470264.1 non-coding upstream 1021949 9862833 ~ 9863388 (-)
XLOC_016199 CR450845.2 non-coding upstream 2064178 10905062 ~ 10905179 (-)

Expression


Co-expression Network