XLOC_016167 (st6galnac5a)


Basic Information

Item Value
gene id XLOC_016167
gene name st6galnac5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9160947 ~ 9260002 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031897
CGTGTTTTCCAGCGTCATGGAGTTGCCGTGTTTCTCGCCATCACCATGTGCACCAGTCTGTTGTTCGTGTATAACGTCAGCTACAATAATAATAGCACTACAGCAGCCAGCGCGTCTAAGGGCGCTTCAGGTGAGACAGTGGAGCCCACCAGAGCGGCCCGCGCGCATCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAGCCTTTGAAGATGCACTGCAGGAGCTGTGCGCTGGTCACTAGCTCTGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCAGAGTGCGTCATCCGAATGAATGACGCGCCCATAGCTCGTGGCTATGGGGCGGACGTGGGTCACCGCACGAGCCTGAGGGTCATTGCTCATTCCAGCATGCAGAGAGTGCTGCGCAGCCGCCATGAACTTCTCAACTCCAGCCAGGAAACAGTCTTCATATTTTGGGGACCCAGCAGTTACATGCGACGGGACGGGAAAGGCCTGGTTTATAACAATCTGCGGCTTATGAACCAAGTGCTCCCCAAACTCAAGGTCTACATTATCTCCTGGCAGAAAATGCTCCAGTTTGATGATTTATTCAAGAGGGAGACTGGTAAAGACAGGAGAATCACTAACTCATGGTTAAGCACAGGCTGGTTCACAATGACTATTGCCTTAGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCTCCAGATTTCTGTAGGGAGTCTCAGCACTCATCTGTTCCGTATCACTACTACGAGCCCACGGGTCCAGATGAATGTGCCATGTACATCTCCCACGAGCGAGGCCGTCGAGGCAGCCACCATCGTTTCATTACAGAGAAACGTGTCTTCGCAAACTGGGCTCGGACATTCAACATCCATTTCTACCAGCCAGATTGGAGTCCTCCACCGTTACCCAGAAACAGCACAGCAACCGCAGCCTTTCCCAGACCGCAGAAGACGTGA
>TCONS_00031898
GATGTCACACCGACCGCTCTCAAGAATGGGTTCAGTCCGTCAGCACAGCACACACACTGCCACATCCCAGCGCGAGCGGAGCGCGGCAATTTGATGTCGACATAATCTGATGAAGTAGCAACAATCAGGGGGAAAAGTGGATCTTCATGCGCACATCCAGGGAATATTCCAGCTGGCTTCAGGATGAAGACACCGATGCGTCATGGAGTTGCCGTGTTTCTCGCCATCACCATGTGCACCAGTCTGTTGTTCGTGTATAACGTCAGCTACAATAATAATAGCACTACAGCAGCCAGCGCGTCTAAGGGCGCTTCAGGTGAGACAGTGGAGCCCACCAGAGCGGCCCGCGCGCATCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAGCCTTTGAAGATGCACTGCAGGAGCTGTGCGCTGGTCACTAGCTCTGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCAGAGTGCGTCATCCGAATGAATGACGCGCCCATAGCTCGTGGCTATGGGGCGGACGTGGGTCACCGCACGAGCCTGAGGGTCATTGCTCATTCCAGCATGCAGAGAGTGCTGCGCAGCCGCCATGAACTTCTCAACTCCAGCCAGGAAACAGTCTTCATATTTTGGGGACCCAGCAGTTACATGCGACGGGACGGGAAAGGCCTGGTTTATAACAATCTGCGGCTTATGAACCAAGTGCTCCCCAAACTCAAGGTCTACATTATCTCCTGGCAGAAAATGCTCCAGTTTGATGATTTATTCAAGAGGGAGACTGGTAAAGACAGGAGAATCACTAACTCATGGTTAAGCACAGGCTGGTTCACAATGACTATTGCCTTAGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCTCCAGATTTCTGTAGGGAGTCTCAGCACTCATCTGTTCCGTATCACTACTACGAGCCCACGGGTCCAGATGAATGTGCCATGTACATCTCCCACGAGCGAGGCCGTCGAGGCAGCCACCATCGTTTCATTACAGAGAAACGTGTCTTCGCAAACTGGGCTCGGACATTCAACATCCATTTCTACCAGCCAGATTGGAGTCCTCCACCGTTACCCAGAAACAGCACAGCAACCGCAGCCTTTCCCAGACCGCAGAAGACGTGA

Function

symbol description
st6galnac5a Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; intestine; and testis. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0001574 ganglioside biosynthetic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-488 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; intestine; and testis. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).

Ensembl:

ensembl_id ENSDARG00000039220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031897 False 975 mRNA 0.53 4 9160947 9259283
TCONS_00031898 True 1161 mRNA 0.53 5 9160947 9260002

Neighbor

gene id symbol gene type direction distance location
XLOC_016166 ak5 coding downstream 100992 8845840 ~ 9059955 (-)
XLOC_016165 NA coding downstream 320063 8835922 ~ 8840884 (-)
XLOC_016164 miga1 coding downstream 472188 8663108 ~ 8688759 (-)
XLOC_016163 si:ch211-71m22.3 coding downstream 512507 8644422 ~ 8648440 (-)
XLOC_016161 si:ch211-71m22.5 coding downstream 524772 8617816 ~ 8636175 (-)
XLOC_016168 st6galnac3 coding upstream 70144 9330146 ~ 9489611 (-)
XLOC_016169 CR385076.1 coding upstream 146556 9406558 ~ 9406675 (-)
XLOC_016170 cope coding upstream 253158 9513160 ~ 9527210 (-)
XLOC_016171 slc25a24l coding upstream 269486 9529488 ~ 9544161 (-)
XLOC_016172 txndc12 coding upstream 332317 9592319 ~ 9607879 (-)
XLOC_016162 CT027589.1 non-coding downstream 525815 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 666231 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 1244560 7915351 ~ 7916387 (-)
XLOC_016148 NA non-coding downstream 1612928 7546686 ~ 7548019 (-)
XLOC_016176 CU633992.1 non-coding upstream 428053 9688055 ~ 9688185 (-)
XLOC_016178 NA non-coding upstream 486435 9746437 ~ 9748216 (-)
XLOC_016181 BX470264.1 non-coding upstream 602831 9862833 ~ 9863388 (-)
XLOC_016199 CR450845.2 non-coding upstream 1645060 10905062 ~ 10905179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_02175343_02190917 ST6GALNAC5, ST6GALNAC5A coding CI01000003 null 2174790 ~ 2193320 (+)