XLOC_016170 (cope)


Basic Information

Item Value
gene id XLOC_016170
gene name cope
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9513160 ~ 9527210 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031901
ACTGATGAACCCGTTTCAGAAGTAGAAGAAGCCGCAGTTCGGTTACGTGGCTTTGACGTGGCCATAGTGATGTCGACAAGTTGACACTTCACAAACATGGCGTCTCAGCAAAGCGAAGTGGATGAGCTGTTCGATGTGAAAAACGCGTTTTACATAGGCAGTTATCAACACTGCATTAACGAAGCTCAGAAAGTAAAGACTTCAGGGCCAGAAAAGGAATCGGAGAAGAACATTTTCCTTTACAGAGCTTATATTGCCCAGagGAAGTATGGTGTGGTACTGGATGACATAAAGCCCAGTTCTACTGAGGAGCTGCAGGCTGTCCGAATGTTTGCCGAGTACCTGTCCAGTGAGGGGAAGAGGGATGCAATAGTAGCAGACCTGGATAAAAAGATATCTAAGAGTGTCGATGTTTCCAACACCACCTTCCTGCTGATGGCGGCTTCCATCTACTTGCATGAAATGAACACAGATGCGGCATTACGTACTCTGCATCAGGGAGAGAGTCTGGAGTGCATGGCCATGACTGTCCAGATTCTACTAAAGTTGGACAGAGTTGATATGGCAAGAAAAGAGCTAAAGAAGATGCAAGACCAAGATGAAGATGCTACTTTGACTCAACTCGCTACAGCCTGGGTCAACCTTGCGATTGGTGGAGAAAAGTTGCAGGATGCCTTCTATATCTTCCAGGAAATGTCAGACAAGTACTCGCCCACGCTGCTGCTGCTAAACGGTCAGGCTGCCAGTCACATGGCTCAGAATAAGTGGGATGAGGCGGAGTCAGTTCTACAGGATGCTCTGGACAAAGACAGCGGCCATCCGGAGACACTCATCAACCTCATTGTGTTGACACAACATATGGGCAAACCATTTGagGTTACAAATCGATATTTGTCTCAACTGAAAGATGCACACAAGTCGCATCCTTTTATTAAGGATTATCTTGCTAAGGAGAATGAATTTGACAGGCTTGTCATGCAGTACGCCCCCAGCGCCTGAAATAGTACCCAGTTTTAATTTATACGTCTCCTATGGTGCACCCCAATGttatttctttcatttcttttatgCCTTTAAACAAAAATGCATCCAGCTCCTTGTCTTTCTCAAATTCCCTAATGCTCTGTCTACATTCCTATATGATGGTTTAATAAACAGGTTGGTTTATCA
>TCONS_00031902
TGACACTTCACAAACATGGCGTCTCAGCAAAGCGAAGTGGATGAGCTGTTCGATGTGAAAAACGCGTTTTACATAGGCAGTTATCAACACTGCATTAACGAAGCTCAGAAAGTAAAGACTTCAGGGCCAGAAAAGGAATCGGAGAAGAACATTTTCCTTTACAGAGCTTATATTGCCCAGagGAAGTATGGTGTGGTACTGGATGACATAAAGCCCAGTTCTACTGAGGAGCTGCAGGCTGTCCGAATGTTTGCCGAGTACCTGTCCAGTGAGGGGAAGAGGGATGCAATAGTAGCAGACCTGGATAAAAAGATATCTAAGAGTGTCGATGTTTCCAACACCACCTTCCTGCTGATGGCGGCTTCCATCTACTTGCATGAAATGAACACAGATGCGGCATTACGTACTCTGCATCAGGGAGAGAGTCTGGAGTGCATGGCCATGACTGTCCAGATTCTACTAAAGTTGGACAGAGTTGATATGGCAAGAAAAGAGCTAAAGAAGATGCAAGACCAAGATGAAGATGCTACTTTGACTCAACTCGCTACAGCCTGGGTCAACCTTGCGATTcgggtgataatcgcaccaaaacgtatttaaagGGTGGAGAAAAGTTGCAGGATGCCTTCTATATCTTCCAGGAAATGTCAGACAAGTACTCGCCCACGCTGCTGCTGCTAAACGGTCAGGCTGCCAGTCACATGGCTCAGAATAAGTGGGATGAGGCGGAGTCAGTTCTACAGGATGCTCTGGACAA

Function

symbol description
cope Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041114-59 Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon).

Ensembl:

ensembl_id ENSDARG00000018562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031901 False 1170 mRNA 0.45 10 9513160 9527210
TCONS_00031902 True 757 mRNA 0.47 8 9518302 9527129

Neighbor

gene id symbol gene type direction distance location
XLOC_016168 st6galnac3 coding downstream 23549 9330146 ~ 9489611 (-)
XLOC_016169 CR385076.1 coding downstream 106485 9406558 ~ 9406675 (-)
XLOC_016167 st6galnac5a coding downstream 253158 9160947 ~ 9260002 (-)
XLOC_016166 ak5 coding downstream 453205 8845840 ~ 9059955 (-)
XLOC_016165 NA coding downstream 672276 8835922 ~ 8840884 (-)
XLOC_016171 slc25a24l coding upstream 2278 9529488 ~ 9544161 (-)
XLOC_016172 txndc12 coding upstream 65109 9592319 ~ 9607879 (-)
XLOC_016173 zmp:0000001127 coding upstream 94079 9621289 ~ 9625548 (-)
XLOC_016174 zgc:153615 coding upstream 102348 9629558 ~ 9646857 (-)
XLOC_016175 selenot1a coding upstream 157095 9684305 ~ 9696283 (-)
XLOC_016162 CT027589.1 non-coding downstream 878028 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 1018444 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 1596773 7915351 ~ 7916387 (-)
XLOC_016176 CU633992.1 non-coding upstream 160845 9688055 ~ 9688185 (-)
XLOC_016178 NA non-coding upstream 219227 9746437 ~ 9748216 (-)
XLOC_016181 BX470264.1 non-coding upstream 335623 9862833 ~ 9863388 (-)
XLOC_016199 CR450845.2 non-coding upstream 1377852 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1803514 11330724 ~ 11331316 (-)

Expression


Co-expression Network