XLOC_016171 (slc25a24l)


Basic Information

Item Value
gene id XLOC_016171
gene name slc25a24l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9529488 ~ 9544161 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031903
CAACAAACTCCCACAGTTCCATCTGCTGGAGGAAAGCAGCGGTACAGCATGAGTTCCTCGGTGAGAGGCTGGCATCTCTCTCGCTGGACCACTGCACTGTTTCATCCAAGCGGGGGCTGTGACTCAGCGTAACCGCAGCAATAAGGTTAAAATATAACAATCCGCCACAAATTAAACTAAAAGGCTTATTTAATAGACTTGTTAACCAACGCGTGACTTTTAAATACGAATATTTGAAATCATGGATCACTTCCGCGGCTTGTTTGAGAAACTCGACAAGAATAAAGACGGTTTTATATCTACTGAGGAGCTGCAGAGTGAAATGCGAAGGATAGGTGTGGAACCAGTCAATGAAAAGGTTAAAGCTATTTTGTCCAGTTATGATAAAAATGAGGATGGACGTCTGAGCTATCAAGAATTTCTTGTTTACATGATGGACAAAGAGAAGAAATGGAAAATAGATTTCCATGCCATTGACAGAAATGAGAGTGGGGTCATTGACTTGGAGGACATCATGACTCTCTTTAAGGAACTAGGTTTGATCATATCAAAACCCAATGCAAAAAGAATCATTCAAATgaTGGATAAAGACAACTCTATGACAGTAGACTGGGAGGAATTTCTCCATCATGTTATTGTTAATCCAGCAGAAAACATTGGGGAACTGGTGTCTTCCTGGAAACATAACCTGGACACACAATCCAGACCACTAGATCCAGCACTGGACATTATTGGAGATAATAAGGCAGATGACAGTGGAGGTCcatagtggaagtcaatgGTGTTTGATGTAGGTGAGAGTCGCTCGATACCTATTGAGTTGACGCAGGAGGAGACTGACCTGTCTGTCTGGGGGAACTTTATTTTGGCCGCAGGCTTGGCAGATGCTGTGTCTAGAACTGTGACGGCACCAATCGATCTTTTAAAGACACGACTTCAGGTCTTTGGATCTAAAGCTGTGTCTCTAGGATTCCGAGAGCTACAGACTGGAGGCATTAGATCCTTGTGGCAAGGAAATGCTGTGAATGTTCTCAAAGGAACACCACAATCAACGCTTCAGTGCTTCATTTATGCCCAGCTGAGGATGTACAGTCTTGGTGAGAGGGACAATCTGTCGGTCTATCAAAGGTTTGGACTAGGCTGTGTGTCTGGGGCTGTGGCACATGCTGTGTTCTACCCACTAGAGGTATCACAGTGACATAACAGGTGCTAAAAGTTAGACTCAATCTCCAACCTGCTGGAACCTACAGTGGAGTTTTGGGATGTGCCAAGTTGATTTACCAGAGTGAGTCTGTGGCGGCTTTTTATAGAGGCTTCAAACCCAGCATACTCTGCATGATTCCATATGCTGGAGTGGAATGTGCAGTGCATCAATCAATAATGAGCTGGGTTAAGCAAGATCCAGAAGACTTTGGTGACTCCAAGCTTTTCCTCTTTAGTTTCGCGGCATTTGCATCAGGACAGGCTACCAGCTACCCACTCGCTGTCATCAGAACTCAACAGCAAGCTCAGGCTTTCTGTTTGAGCTCACAGAAGCCTGGAGATGTTCTTCAGGGTCTCACTGGTATCTATACGAAATATGGAGTCCGGGGGTTTTATAATGGAATGGGGGCAAGTTTTGTAAGGGCGGTTCCCTGCGCCCTGCTGAATTACAGCCTGACCTCAAAATTCCAGACACTGCTCTCAACAGTGTCATAATAATCAGTCAGGATCAGCGATGATATCAAGAACcgtgtgtatatttataataataaatgtttttttaataata
>TCONS_00031904
CAACAAACTCCCACAGTTCCATCTGCTGGAGGAAAGCAGCGGTACAGCATGAGTTCCTCGGTGAGAGGCTGGCATCTCTCTCGCTGGACCACTGCACTGTTTCATCCAAGCGGGGGCTGTGACTCAGCGTAACCGCAGCAATAAGGTTAAAATATAACAATCCGCCACAAATTAAACTAAAAGGCTTATTTAATAGACTTGTTAACCAACGCGTGACTTTTAAATACGAATATTTGAAATCATGGATCACTTCCGCGGCTTGTTTGAGAAACTCGACAAGAATAAAGACGGTTTTATATCTACTGAGGAGCTGCAGAGTGAAATGCGAAGGATAGGTGTGGAACCAGTCAATGAAAAGGTTAAAGCTATTTTGTCCAGTTATGATAAAAATGAGGATGGACGTCTGAGCTATCAAGAATTTCTTGTTTACATGATGGACAAAGAGAAGAAATGGAAAATAGATTTCCATGCCATTGACAGAAATGAGAGTGGGGTCATTGACTTGGAGGACATCATGACTCTCTTTAAGGAACTAGGTTTGATCATATCAAAACCCAATGCAAAAAGAATCATTCAAATgaTGGATAAAGACAACTCTATGACAGTAGACTGGGAGGAATTTCTCCATCATGTTATTGTTAATCCAGCAGAAAACATTGGGGAACTGGTGTCTTCCTGGAAACATAACCTGGTGTTTGATGTAGGTGAGAGTCGCTCGATACCTATTGAGTTGACGCAGGAGGAGACTGACCTGTCTGTCTGGGGGAACTTTATTTTGGCCGCAGGCTTGGCAGATGCTGTGTCTAGAACTGTGACGGCACCAATCGATCTTTTAAAGACACGACTTCAGGTCTTTGGATCTAAAGCTGTGTCTCTAGGATTCCGAGAGCTACAGACTGGAGGCATTAGATCCTTGTGGCAAGGAAATGCTGTGAATGTTCTCAAAGGAACACCACAATCAACGCTTCAGTGCTTCATTTATGCCCAGCTGAGGATGTACAGTCTTGGTGAGAGGGACAATCTGTCGGTCTATCAAAGGTTTGGACTAGGCTGTGTGTCTGGGGCTGTGGCACATGCTGTGTTCTACCCACTAGAGGTGCTAAAAGTTAGACTCAATCTCCAACCTGCTGGAACCTACAGTGGAGTTTTGGGATGTGCCAAGTTGATTTACCAGAGTGAGTCTGTGGCGGCTTTTTATAGAGGCTTCAAACCCAGCATACTCTGCATGATTCCATATGCTGGAGTGGAATGTGCAGTGCATCAATCAATAATGAGCTGGGTTAAGCAAGATCCAGAAGACTTTGGTGACTCCAAGCTTTTCCTCTTTAGTTTCGCGGCATTTGCATCAGGACAGGCTACCAGCTACCCACTCGCTGTCATCAGAACTCAACAGCAAGCTCAGGCTTTCTGTTTGAGCTCACAGAAGCCTGGAGATGTTCTTCAGGGTCTCACTGGTATCTATACGAAATATGGAGTCCGGGGGTTTTATAATGGAATGGGGGCAAGTTTTGTAAGGGCGGTTCCCTGCGCCCTGCTGAATTACAGCCTGACCTCAAAATTCCAGACACTGCTCTCAACAGTGTCATAATAATCAGTCAGGATCAGCGATGATATCAAGAACcgtgt

Function

symbol description
slc25a24l Predicted to enable ATP transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040923-1 Predicted to enable ATP transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000038977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031903 False 1771 nonsense_mediated_decay 0.44 11 9529488 9544161
TCONS_00031904 True 1626 mRNA 0.45 10 9529523 9544161

Neighbor

gene id symbol gene type direction distance location
XLOC_016170 cope coding downstream 2278 9513160 ~ 9527210 (-)
XLOC_016168 st6galnac3 coding downstream 39877 9330146 ~ 9489611 (-)
XLOC_016169 CR385076.1 coding downstream 122813 9406558 ~ 9406675 (-)
XLOC_016167 st6galnac5a coding downstream 269486 9160947 ~ 9260002 (-)
XLOC_016166 ak5 coding downstream 469533 8845840 ~ 9059955 (-)
XLOC_016172 txndc12 coding upstream 48158 9592319 ~ 9607879 (-)
XLOC_016173 zmp:0000001127 coding upstream 77128 9621289 ~ 9625548 (-)
XLOC_016174 zgc:153615 coding upstream 85397 9629558 ~ 9646857 (-)
XLOC_016175 selenot1a coding upstream 140144 9684305 ~ 9696283 (-)
XLOC_016176 CU633992.1 coding upstream 143894 9688055 ~ 9688185 (-)
XLOC_016165 NA non-coding downstream 688604 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 894356 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 1034772 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 1613101 7915351 ~ 7916387 (-)
XLOC_016178 NA non-coding upstream 202276 9746437 ~ 9748216 (-)
XLOC_016181 BX470264.1 non-coding upstream 318672 9862833 ~ 9863388 (-)
XLOC_016199 CR450845.2 non-coding upstream 1360901 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1786563 11330724 ~ 11331316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_01956459_01966449 SLC25A24L coding CI01000003 null 1956401 ~ 1966455 (+)