XLOC_016174 (zgc:153615)


Basic Information

Item Value
gene id XLOC_016174
gene name zgc:153615
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9629558 ~ 9646857 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031907
ACTATACAATGCGCTGAAAGATGGTGCACCAGGAGAAATGTGTTTACCAGGCCCAGAGGAATGAGAGGGAGTCCATTAGGCAGAAGCTGGCCCTTGGCAGTTTCTATGACGACGGACCGATTACCTTTACTGGCTGTAGCAAGAGCGGCAAAAACTGCCTGTCCTCACGTCTTCAGAATGGGGTGAACCTACAGATGTGCTTTGTGAATGACAGCAGCAGTGACCGGGACAGTGATGCAGAGGACAGCAGAACAGAGACCAGCCTGGACACCCCATTGTCACCTATGAGTAAACAGAGTTCCTCTCTGTCAGACCGGGATACAGGAGAGGAAGACCTAGACTCGGAGGATTCGGAGTTCTGGCGGCTCCAGCGGCGGCTGCAGGAGGAGGCGCGTGTGGCTCTAGCTTTGGCCCGTCCCATGGCCCGCATGCAGGTGGAGGTGGAGAGACAAATTCAGATACACAGAAGGTCTCCTGTGGCAGACCTGTTACCCCATCTGCCACATATCAGTGAGTGTCTGATGAAGAGGAATCTGAGGCCTGTGGACATGAGGGATATGAGCCTTGGTCAGTTACAAGTCATCACCAATGATCTGCATTCTCAGATACAAggtctgaaTGAGGAGCTGGTTCAGCTTTTGCTAATGAGAGATGAACTCCACATGGAACAGGATGCCATGCTGGTAGATGTGGAAGATCTAACCAGGCATGCGCACAGCCAGCAGAGGCACATGATGGAGAAATCTCTGGGCAAAGGCAAATCAGCTTGCCACGGTGGCTGTGGTTCTCCATTCTAAAGACACAGAGAATAAACCCTTGCGTTTCACTATACGAAGAAGCAATGTACTAAATGTAGATCCCTTTTTTCCAACTAGTCGTGTGTGTAAAGCTTTGTGTGGATGTATGTTATTTATACATGCTGTGTTCATGCATGCTGGCACCTTGGGAAGTTTTAGTTCCTTGTCACTGTCCATCTGGCTCGCTCGGTCGGGGTCGGCGGAGCTGTGACATTCGTatgaaactgaactgaatcagttttaAGCAAACTAGAACTAGAATTCCACCTGCCTGACATGCTGAATATGTCCCACGAAGTGAAATGTTATGGCTTTTTTTCCGTGTTCATCCGTGTAAAgaggctttgacacaatttacagttatataaaaataaaaatgatttacttAAGGGTTATATATTAATACTGAAGGAAGGATATGAATCAAGATGGCATATTTTCCCGAATGTACACTTGTTGTTCTACACtccaaaaattatttttgctgtttgatCAAACtataaatagtgtttaaaatgagttgaaacaacaccattcttaaggttttttgggacaactgaAATGtcttatgtttaatccacttaaaagtgtaaaaaatatattgagtTAACTTTACTGATTTATGTTGGAACAAGATGAAGGAATCGTGTGGAACAAAGACATTGTAAGTCTCTTTGCactgaccaaaataacaaacaacttCAATAGAAGGctaattcacccaaaaatcactGATCAATTAACAAATGGCACAACCGTGTGAAGATATTTCATCTGTGTTTGtcctaaaaaatgcaaataaatcaaCATTGTTTGGTTGTCTTTCGCAGAAAttgtggaaaataaataaacaaacggcTTACAGTAATATGTGCTAGTGTGTTTTCGTTTTCATCTGTTTAGCACAGTCACAAGGGAAGAGGCACTCAACACCAAACAAGTGTCATTGTGGTTTGTGTTATAGGTCAgtcccaaaaatgaaacttcttgagttgaataaaaatctaaaaactgtgttt

Function

symbol description
zgc:153615 Predicted to be involved in positive regulation of hippo signaling. Predicted to be active in cell junction and plasma membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0035332 positive regulation of hippo signaling biological_process
GO:0005575 cellular_component cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-79 Predicted to be involved in positive regulation of hippo signaling. Predicted to be active in cell junction and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000038981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031907 True 1816 mRNA 0.43 8 9629558 9646857

Neighbor

gene id symbol gene type direction distance location
XLOC_016173 zmp:0000001127 coding downstream 4010 9621289 ~ 9625548 (-)
XLOC_016172 txndc12 coding downstream 21679 9592319 ~ 9607879 (-)
XLOC_016171 slc25a24l coding downstream 85397 9529488 ~ 9544161 (-)
XLOC_016170 cope coding downstream 102348 9513160 ~ 9527210 (-)
XLOC_016168 st6galnac3 coding downstream 139947 9330146 ~ 9489611 (-)
XLOC_016175 selenot1a coding upstream 37448 9684305 ~ 9696283 (-)
XLOC_016176 CU633992.1 coding upstream 41198 9688055 ~ 9688185 (-)
XLOC_016177 dvl3a coding upstream 55196 9702053 ~ 9744081 (-)
XLOC_016178 NA coding upstream 99580 9746437 ~ 9748216 (-)
XLOC_016179 ap2m1a coding upstream 142954 9789811 ~ 9818711 (-)
XLOC_016169 CR385076.1 non-coding downstream 222883 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 788674 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 994426 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 1134842 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 1713171 7915351 ~ 7916387 (-)
XLOC_016181 BX470264.1 non-coding upstream 215976 9862833 ~ 9863388 (-)
XLOC_016199 CR450845.2 non-coding upstream 1258205 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1683867 11330724 ~ 11331316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_01893593_01901539 SCHIP1 coding CI01000003 null 1893593 ~ 1901769 (+)