XLOC_016175 (selenot1a)


Basic Information

Item Value
gene id XLOC_016175
gene name selenot1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9684305 ~ 9696283 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031908
GACTGATCATGGGGAAGATGCGCTGGCTGCCGTTCTCGGCTCTACTATTATGGGCCTTATGTCTTCACAGCGCTTCTGCCGATAACAATGGCGTGAAGAAAATGAAGATGCAGTTTGCCACGGGTCCACTTCTCAAATTCCAGATTTGTGTCTCCTGAGGGTACAAGCGGGTGTTTGAGGAGTACACGCAGGCTTTGTACCAGCGGTACCCAGACATCCGCATAGAGGGAGAGAACTACCTTCCTCTGCCCCTCTACAGGCACATTGCTTCCTTTCTGTCAATGTTTAAGCTGTTGTTAATCGGAGTGATCATCTTGGGCAAGGATCCTTTTGCTTTATGTGGCATGCAGGCTCCAGGGATCTGGGTTTGGAGTCAGGAGAATAAGATATATGCTTGTATGATGGTGTTCTTCTTCAGCAATATGATCGAAAATCAGTGCATGTCTACAGGCGCATTTGAAATCACGCTCAATGATGTCCCAGTTTGGTCCAAGCTGGAGTCAGGACACCTGCCTTCAATGCAGCAGCTAGTCCAAATCCTGGAGAATGAGATGAAGATGAGCATGCACATGGACACACTTCCACCCCATCAGTCATAACCTTGCCTCTGATTCACTGAACTGAGCCTATGACCCCCTCCACATTTCTGGTGGCGCTCTCCTACGGTTGTGAGATGGCATTTATGAAGGTTTGTGCTGAAAGTAGCAACTACTAGCACACACCGGATGTTCTGCGCTCTCCTCATCGTGCCCTTTGGAGATGCAGCACCTACAGCTGGTGCGGGATCTACGGCAACAACAGTGCTCAAATAAACTGCAACCCCCATCCTCTGTGCAAAAACCATTTGCTTCAGGATAAATGTTCGCAAGCATCACGTCATAAATTATTTCTATTACATcagcaaaaaaaatctaacattttaaagtgattttgtttCTTAATCATCCGTATGTCTAAACCAggtgtttcttttatttaatacatgtagAAGTTTCTAATTTATTCATCCAGCTCCATCAAAGTAATATTAATTCTATTTCTGAGCCCTGATTTTTATATTGCTTTGTATAACTTAATGTTTACTATAAGATGAATAAAATAGTCTAACAAACTAAACTACTCCTGGTCTTTACTGGAGAAATCGGGatgcaaataaaactaaaaacgtTGAAATAACTTTAGCATTGGCAAAACTGAACAAGTTTGTTTTGTCAATCGTTTACTCAATGCCTTCAAATGTTTTAATACAGAATTGGGTTTAGGCTGCAATTTACTCTAATAAAGTTGATTATGTTGTTGTA

Function

symbol description
selenot1a Predicted to enable thioredoxin-disulfide reductase activity. Predicted to be involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; mesoderm; and sensory system. Orthologous to human SELENOT (selenoprotein T).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030327-6 Predicted to enable thioredoxin-disulfide reductase activity. Predicted to be involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; mesoderm; and sensory system. Orthologous to human SELENOT (selenoprotein T).

Ensembl:

ensembl_id ENSDARG00000058354

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031908 True 1301 mRNA 0.42 6 9684305 9696283

Neighbor

gene id symbol gene type direction distance location
XLOC_016174 zgc:153615 coding downstream 37448 9629558 ~ 9646857 (-)
XLOC_016173 zmp:0000001127 coding downstream 58757 9621289 ~ 9625548 (-)
XLOC_016172 txndc12 coding downstream 76426 9592319 ~ 9607879 (-)
XLOC_016171 slc25a24l coding downstream 140144 9529488 ~ 9544161 (-)
XLOC_016170 cope coding downstream 157095 9513160 ~ 9527210 (-)
XLOC_016177 dvl3a coding upstream 5770 9702053 ~ 9744081 (-)
XLOC_016178 NA coding upstream 50154 9746437 ~ 9748216 (-)
XLOC_016179 ap2m1a coding upstream 93528 9789811 ~ 9818711 (-)
XLOC_016180 si:ch211-252f13.5 coding upstream 152353 9848636 ~ 9857932 (-)
XLOC_016181 BX470264.1 coding upstream 166550 9862833 ~ 9863388 (-)
XLOC_016169 CR385076.1 non-coding downstream 277630 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 843421 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 1049173 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 1189589 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 1767918 7915351 ~ 7916387 (-)
XLOC_016199 CR450845.2 non-coding upstream 1208779 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1634441 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1640757 11337040 ~ 11337983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G23315 NA unknown CI01000003 null 1863892 ~ 1866921 (+)
rainbow trout (Oncorhynchus mykiss) G137772 NA non-coding NC_048566.1 CM023220.2 36905465 ~ 36905799 (+)
rainbow trout (Oncorhynchus mykiss) G2125560 LOC106599070 non-coding NC_048592.1 CM023246.2 29265047 ~ 29269424 (+)
eurasian perch (Perca fluviatilis) selenot1a selenot,LOC103365166 misc NC_053122.1 CM020919.1 24862996 ~ 24870087 (+)
eurasian perch (Perca fluviatilis) G138684 NA non-coding NC_053124.1 CM020921.1 36184037 ~ 36193304 (+)
mexican tetra (Astyanax mexicanus) G117383 pomgnt1 non-coding NC_035909.1 CM008312.1 41353509 ~ 41359883 (-)
mexican tetra (Astyanax mexicanus) G52655 NA non-coding NC_035902.1 CM008305.1 16622749 ~ 16677399 (-)