Fish Transcriptome and Expression Database

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model fish

XLOC_016176 (CU633992.1)

Basic Information

Item	Value
gene id	XLOC_016176
gene name	CU633992.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	9688055 ~ 9688185 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031909
cccaacaataataattgtagatagctagctctctgcaactctcacagaGTCGCCTACTTAAGCTAAGCAGGGCTCTGCCCAGTccgtacctggatggaagaccacatgggaaagacaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000102166

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00031909	True	131	rRNA	0.50	1	9688055	9688185

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_016174	zgc:153615	coding	downstream	41198	9629558 ~ 9646857 (-)
XLOC_016173	zmp:0000001127	coding	downstream	62507	9621289 ~ 9625548 (-)
XLOC_016172	txndc12	coding	downstream	80176	9592319 ~ 9607879 (-)
XLOC_016171	slc25a24l	coding	downstream	143894	9529488 ~ 9544161 (-)
XLOC_016170	cope	coding	downstream	160845	9513160 ~ 9527210 (-)
XLOC_016177	dvl3a	coding	upstream	13868	9702053 ~ 9744081 (-)
XLOC_016178	NA	coding	upstream	58252	9746437 ~ 9748216 (-)
XLOC_016179	ap2m1a	coding	upstream	101626	9789811 ~ 9818711 (-)
XLOC_016180	si:ch211-252f13.5	coding	upstream	160451	9848636 ~ 9857932 (-)
XLOC_016181	BX470264.1	coding	upstream	174648	9862833 ~ 9863388 (-)
XLOC_016169	CR385076.1	non-coding	downstream	281380	9406558 ~ 9406675 (-)
XLOC_016165	NA	non-coding	downstream	847171	8835922 ~ 8840884 (-)
XLOC_016162	CT027589.1	non-coding	downstream	1052923	8634240 ~ 8635132 (-)
XLOC_016159	NA	non-coding	downstream	1193339	8490588 ~ 8494716 (-)
XLOC_016156	NA	non-coding	downstream	1771668	7915351 ~ 7916387 (-)
XLOC_016199	CR450845.2	non-coding	upstream	1216877	10905062 ~ 10905179 (-)
XLOC_016204	BX901918.3	non-coding	upstream	1642539	11330724 ~ 11331316 (-)
XLOC_016205	BX901918.2	non-coding	upstream	1648855	11337040 ~ 11337983 (-)

Expression

Co-expression Network