XLOC_016177 (dvl3a)


Basic Information

Item Value
gene id XLOC_016177
gene name dvl3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9702053 ~ 9744081 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031910
AAACCCTCTGGAAGGAGAGCACAGGGAAGCTCTCCGAGTAGCCACGACATTCCGGACCAAAATTATCTTTTCTACCACACATATTACGTGTTATTCTCCGATCTCAACAAGCGAGGTAACGTGAAATAGGAGTACGGATTAATAATCACCTTTCAAGCCCGCCAGCTCATGGAATATTTGCGCTGAAACAGAAGATTCCTGGGAACTCCGGAGCAAggcaaggaaggaaggaaagaaagaaacaacGAACGGGATTAACAAAAAAGTCCACTGGCGGGTGAAAGCGAGCAAAAGCCCGTTCTGGAGGGGCATCAGGGGAGCCCCTGCACTGGATGACCGCCGTCCACTTCTCCCCAGCGGTCTGCAATGGGGGAGACTAAAGTTATCTACCATCTCGACGACCAGGAAACTCCATACCTGGTCAAACTGCCCATCCCTGCCGAAAGGGTCACCCTTTTGGACCTGAAAAATGCTCTCAAGAAACCAAATTACAAGTTTTTCTTTAAATCAATGGACGATGACTTTGGGGTGGTCAAGGAAGAAATCACAGACGACAATGCAAAGCTTCCCTGTTACAATGGCCGTGTGATTTGTTGGCTGGTGTCATCAGACGGCTCCCACTCAGATGGATGTTCAGTAGCAGAGAGTCAGTCTGAGCGGCCGCCATCTCACGAGAGAAGCCAAGGCATTGGAGATTCCAGACCCCCATCCTTCCATCCAAAGGCTGCAGGCAGCCGGCATGGTGTGGATGATGAGACGGAGACCGATTCGGTTGTGTCACACAGGAGAGACAGAGACAGGGACAGATCGCGGAGGAAACACTCACATGAGCACTCTGGAGGAAAGCAGAATGGCTACTCGCGGGGAGGCAGAGGCATGGATCTGGGAGGCTATGACATCTGTGACAGCCGTTCCTCCCTCATGAGCAGTGAACTGGAATCGAGCAGCTGTTTTGACTCGGATGACGGCTCCACCAGCCGTTTCAGCAGTGTTACAGAGCAAAGTGGCTCATCCAAACTAATGACAAAAAAACCCCGGCGGCGGAGGCGCAAGACCAGAGCCCAGCAAATGGAAAGGTCTTCATCATTCAGTAGCATCACTGACTCCACTATGTCCCTGAATATCATCACTGTCACTTTAAATATGGAGAAGTATAACTTTCTGGGCATCAGCATCGTGGGTCAGAGTAATGAGCGGGGTGATGGAGGAATCTACATCGGCTCCATAATGAAGGGTGGAGCAGTGGCGGCTGATGGGCGGATCGAGCCCGGTGACATGCTGCTGCAGGTGAACGACATCAACTTTGAGAACATGTGCAACGATGATGCCGTGCGAGTGCTGAGGGAGATTGTGCACAAGCCTGGACCTGTATCGCTTACTGTGGCCAAATGCTGGGACCCAAACCCTAACAGTTGCTTTGCTTTGCCGAGGAGTGAACCCATCCGGCCTATTGACCCTGCAGCCTGGGTGTCCCATACAGCAGCCATGACGGGTGTCTATCCTCCCTACGGCATGAGTCCATCCATGAGCACAGTCACCTCCACCAGCTCCTCCATTTCCAGCTCCATCCCCGAGACCGAGAGATTTGATGACTACCACCTGTCCGTCCACAGCGACATGGCAACAGTTGCAAAAGCAATGGCCTGTCCAGACTCGGGATTGGAAGTTCGAGACCGAATGTGGCTGAAGATCACTATAGCCAATGCTTTCATAGGTTCGGATGTGGTGGACTGGCTTTTTCATCATGTGGAGGGGTTCACAGATCGCCGTGAAGCACGAAAGTATGCCAGCAACCTGTTGAAGGCTGGCTTCATCCGCCACACGGTCAACAAAATCACCTTCTCAGAGCAGTGCTACtacatctttggagatctttctgGCAACATGGCCCATCTCTCTCTGCAAGACCACGACGGGTCAAGTGGAGCATCTGATCAGGACACTCTTGCTCCTTTGCTTCACCCTGCTGAAGCTCCCTGGCCCGCAGCGTTCCCGTACCAGTACCCAGCAGCCCATTCACACCTGGAGGAAGCTGGAGGAGGCAGCGCAGGCAGTCAGCAAAGTGAAGGGAGCAGCGGTTCAAACTGCAGCTGGAGCAGGACTGAGGGCAAAACCGCAGCCGGAGACTTCAGGTTAGGAGGCGGAAGCGAAATGGGTGACGCTCACGAGTTTGACTTCCGCCGAGACCGAGCACCCAGCGAACGCTCGGGCGTGCCCCCCAGCGAGGGCAGCGTGCGGAGCTCTCGGTCTCACAGCTACAGCCTGAAGCAGGGGTCTGCACGAGGTGGCCCGGGGTCACCATCCGGCCGACATCTTGCCCACATTCCCCCTGAACTCACTGGCTCTCGCCGCTCCTGCAACACAGCCAACGGGGAGTTCTTCGTCGACATCATGTGACTTTACCCAGCAGAAGTGCCCAAACTATTCTTTGCCTTATGgacgagaaaaaaaagaaagaaacgtGGCCAACTAGAGCAACCGATTAGAATTAGGTTTAGTGCTGATCTAAAAAATCAGTAGCTTGTGAGCCCCGACATTACTTAGGCCTTAGAAATTAGTCTACTAAAGCATAAGCAAACGTCACTTACAATAACAAAACAACGTTGAACGCGAAATCACCTCGCGGAGAAATTCAAATAGGAATATTTCCTCTGACAGATGAAAAAAAGGGGGGATTTTTGAGAGAAATAGCAATAATTCAATGGGATTTAGCTGCAGCGCTACATGGTGTAAGGATTCATGGTGAATGTAGTCCAACCGTGGACATAAACGTCAAACTATAAAGAGAAATTTGAGTgcttattaacttttttttgcccTCTTTTAACATTTGTACTCTCGGTAAATGTCGGATATGTCGTTGTTCATGCGAATCGATTTTACTGAGAATATATTTTTCAGTGTTTGTCAGCAATATTGTATTGGGAGAATTGTTTTGAAGTACCATGTTAAGGAgagttctttttttaatttataaatatagttttattgtgaCATGCTTGGAGTACA

Function

symbol description
dvl3a Predicted to enable frizzled binding activity. Acts upstream of or within canonical Wnt signaling pathway; convergent extension involved in axis elongation; and post-anal tail morphogenesis. Located in cell cortex and spindle. Is expressed in liver. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 3. Orthologous to human DVL3 (dishevelled segment polarity protein 3).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005819 spindle cellular_component
GO:0005829 cytosol cellular_component
GO:0005938 cell cortex cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010319-1 Predicted to enable frizzled binding activity. Acts upstream of or within canonical Wnt signaling pathway; convergent extension involved in axis elongation; and post-anal tail morphogenesis. Located in cell cortex and spindle. Is expressed in liver. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 3. Orthologous to human DVL3 (dishevelled segment polarity protein 3).

Ensembl:

ensembl_id ENSDARG00000015707

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031910 True 3009 mRNA 0.50 15 9702053 9744081

Neighbor

gene id symbol gene type direction distance location
XLOC_016175 selenot1a coding downstream 5770 9684305 ~ 9696283 (-)
XLOC_016176 CU633992.1 coding downstream 13868 9688055 ~ 9688185 (-)
XLOC_016174 zgc:153615 coding downstream 55196 9629558 ~ 9646857 (-)
XLOC_016173 zmp:0000001127 coding downstream 76505 9621289 ~ 9625548 (-)
XLOC_016172 txndc12 coding downstream 94174 9592319 ~ 9607879 (-)
XLOC_016178 NA coding upstream 2356 9746437 ~ 9748216 (-)
XLOC_016179 ap2m1a coding upstream 45730 9789811 ~ 9818711 (-)
XLOC_016180 si:ch211-252f13.5 coding upstream 104555 9848636 ~ 9857932 (-)
XLOC_016181 BX470264.1 coding upstream 118752 9862833 ~ 9863388 (-)
XLOC_016182 abi1b coding upstream 124520 9868601 ~ 9915870 (-)
XLOC_016169 CR385076.1 non-coding downstream 295378 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 861169 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 1066921 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 1207337 8490588 ~ 8494716 (-)
XLOC_016199 CR450845.2 non-coding upstream 1160981 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1586643 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1592959 11337040 ~ 11337983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location