XLOC_016179 (ap2m1a)


Basic Information

Item Value
gene id XLOC_016179
gene name ap2m1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9789811 ~ 9818711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031916
TTGCGTTGTCACTTGTTATACGCATGCGCACTGTGAACACTGTCAGCTGACTTCCTGGCTGAGGGAGGGACTGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAATGGCCACCAAGCAGAGGGACCAGCTTTTATTCTCCTATAAGTATACTATGTTTCCCTCTAGCCGTCTCCTTAAAATTTGTGGCTCAAGTAGAAAGCTAATAACAAAAATATGCAAAATGTGAAGTGTAGTTACCTGTATGTGTTTGTACGAGTGCTGTAATGAACAGATTCAGTGTCCTTCCAAGTCCAGCTTCCTGATTCACTGTTATCGGATATCTGGAGACCGTTGTCCATTTTGTCATTGGTTATTTTCCCCACGGTCATACTCTTAGTATCCTATCACTATCTCTCTCTGTGTTTAGATCAGTAAAAATATATAACGAGAACAAACTGAAATGGTGTGGAGTTTTTcttactttgtttgtttgtttcattacaGCGCAGATCAAAATTTGAGAACAGTTCATTAAAACACAGAGGCAACATGTATGATGTTTTTTCATGAAATATCCAAAAACCACAAGAACAGTGTTACAGTGCAatcagaaagtattcatagcgcttcactttttccacatgttttttgttgttgttcagcctcattccaaaatggattaaattaatttatttcttcaattctacacagaataccccataatgacaatgtgaaaaagagtttttgaaacttgcaaatttattaaaaataaaaaaactgaaaaaa
>TCONS_00031918
ACTGTCAGCTGACTTCCTGGCTGAGGGAGGGACTGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCCTCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGAGTTAGGGGGAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAATGGCCACCAAGCAGAGGGACCAGCTTTTATTCTCCTATAAGTATACTATGTTTCCCTCTAGCCGTCTCCTTAAAATTTGTGGCTCAAGTAGAAAGCTAATAACAAAAATATGCAAAATGTGAAGTGTAGTTACCTGTATGTGTTTGTACGAGTGCTGTAATGAACAGATTCAGTGTCCTTCCAAGTCCAGCTTCCTGATTCACTGTTATCGGATATCTGGAGACCGTTGTCCATTTTGTCATTGGTTATTTTCCCCACGGTCATACTCTTAGTATCCTATCACTATCTCTCTCTGTGTTTAGATCAGTAAAAATATATAACGAGAACAAACTGAAATGGTGTGGAGTTTTTcttactttgtttgtttgtttcattacaGCGCAGATCAAAATTTGAGAACAGTTCATTAAAACACAGAGGCAACATGTATGATGTTTTTTCATGAAATATCCAAAAACCACAAGAACAGTGTTACAGTGCAatcagaaagtattcatagcgcttcactttttccacatgttttttgttgttgttcagcctcattccaaaatggattaaattaatttatttcttcaattctacacagaataccccataatgacaatgtgaaaaagagtttttgaaacttgcaaatttatt
>TCONS_00031917
ACTGTCAGCTGACTTCCTGGCTGAGGGAGGGACTGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCCTCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAATGGCCACCAAGCAGAGGGACCAGCTTTTATTCTCCTATAAGTATACTATGTTTCCCTCTAGCCGTCTCCTTAAAATTTGTGGCTCAAGTAGAAAGCTAATAACAAAAATATGCAAAATGTGAAGTGTAGTTACCTGTATGTGTTTGTACGAGTGCTGTAATGAACAGATTCAGTGTCCTTCCAAGTCCAGCTTCCTGATTCACTGTTATCGGATATCTGGAGACCGTTGTCCATTTTGTCATTGGTTATTTTCCCCACGGTCATACTCTTAGTATCCTATCACTATCTCTCTCTGTGTTTAGATCAGTAAAAATATATAACGAGAACAAACTGAAATGGTGTGGAGTTTTTcttactttgtttgtttgtttcattacaGCGCAGATCAAAATTTGAGAACAGTTCATTAAAACACAGAGGCAACATGTATGATGTTTTTTCATGAAATATCCAAAAACCACAAGAACAGTGTTACAGTGCAatcagaaagtattcatagcgcttcactttttccacatgttttttgttgttgttcagcctcattccaaaatggattaaattaatttatttcttcaattctacacagaataccccataatgacaatgtgaaaaagagtttttgaaacttgcaaatttatt
>TCONS_00031919
ATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGAGTTAGGGGGAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAA
>TCONS_00031920
TGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAA
>TCONS_00031921
CATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTAAGGACAGCATTATCTTAAGTCtcagttctctttagcttgaaggcgtagggctaa
>TCONS_00031922
TGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGaaaagaaaCTCCAACAGGCTTGTAACAagttgagaGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATG

Function

symbol description
ap2m1a Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in blood; mesoderm; notochord; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0035615 clathrin adaptor activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9784 Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in blood; mesoderm; notochord; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1).

Ensembl:

ensembl_id ENSDARG00000002790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031916 False 2187 mRNA 0.46 12 9789811 9818711
TCONS_00031918 False 2142 mRNA 0.46 12 9789833 9818673
TCONS_00031917 False 2127 mRNA 0.46 11 9789833 9818673
TCONS_00031919 False 1326 mRNA 0.51 12 9790472 9816532
TCONS_00031920 False 662 mRNA 0.52 5 9801604 9816492
TCONS_00031921 False 199 lncRNA 0.51 2 9804247 9804547
TCONS_00031922 True 519 mRNA 0.51 4 9808070 9818640

Neighbor

gene id symbol gene type direction distance location
XLOC_016178 NA coding downstream 41595 9746437 ~ 9748216 (-)
XLOC_016177 dvl3a coding downstream 45730 9702053 ~ 9744081 (-)
XLOC_016175 selenot1a coding downstream 93528 9684305 ~ 9696283 (-)
XLOC_016176 CU633992.1 coding downstream 101626 9688055 ~ 9688185 (-)
XLOC_016174 zgc:153615 coding downstream 142954 9629558 ~ 9646857 (-)
XLOC_016180 si:ch211-252f13.5 coding upstream 29925 9848636 ~ 9857932 (-)
XLOC_016181 BX470264.1 coding upstream 44122 9862833 ~ 9863388 (-)
XLOC_016182 abi1b coding upstream 49890 9868601 ~ 9915870 (-)
XLOC_016183 zgc:55943 coding upstream 139370 9958081 ~ 9971728 (-)
XLOC_016184 CR956623.2 coding upstream 143157 9961868 ~ 10014821 (-)
XLOC_016169 CR385076.1 non-coding downstream 383136 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 948927 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 1154679 8634240 ~ 8635132 (-)
XLOC_016199 CR450845.2 non-coding upstream 1086351 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1512013 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1518329 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1738264 11556975 ~ 11558124 (-)

Expression


Co-expression Network