XLOC_016180 (si:ch211-252f13.5)


Basic Information

Item Value
gene id XLOC_016180
gene name si:ch211-252f13.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9848636 ~ 9857932 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031923
ATGATGGATTCTCAGAGGTTTTTACTTCTCGTCTGTCTCACGATGTGCGGCAGAGACATTGAAAGTGCATCTGAAATAAGGTTGCCAGATCATCAAAGCAGATCATCTCATGTCCAGAACCGATATTCAATATACGCTTCAAGACGCCCCTCGGTTCCCTACACCGTCATTCATCCCAGCAGAACCGGCAGTCTGAGAGAAAATCCGAGGACCATCACGGCTGAGGTGTTGAACCCACAGGGTGGTTGCACGGGTGGAGGTTGCCATGGCTCGCAGAGACCAGCAAACAACCACACAAAAGAGTGCAAAGGCATCGGATGTAAACTGCCTGTAAGGATGCGACAAGATCCCAAACAGCATTCCTGTGTTGGAGACGCCTGCAGCACAGGGTCAGATGCTGGAAGGAGCAGACTGTCTTTTGTCCATATGCAGGACAGAGCCGAGCAAGTATCGGTGGAATTTCCGGAGTTGGGGACTCAAGGGGGTCCATCATCTGGGATTCAGTTAACATGCGACATTAAGCCAGGCACAAATGAGGTCAATTCTGAAGATGCTTTAGTGCTGCATTTGCACTTGGCAAAGGGTCAGGATAAACTGGTTGCACAGCTGCATGGGCAGCAAGAGGAGGTTAAACAAATCCAGAGCGCGCTGAGAGAACAGCAAAGTGCTCTTCTAGCCCACCAAAGAGAAATACTGGACCAACAACGGATCATGTTTGACAAGATGGATGAAGTCAAGACTCAATACAGCCTTCTTCTTGACAGTGTCAAACAGTTGACTGTAGTAAGCCCACAAGGAGGCATTGAGAGTCATTTGGAAGGTCTCCAATCTCAGGTTAGGACCTATTCTCAAGAAGCCTTCACAATGCATAAGATGAACATGGATGCTAGTGTTACGGATGCTGACAGACCTCTTATTGGATGTGGATCCTGCCAAACAGATGAGTATTGTGACTTCAGCGCTGAGAAGCCCCGTTGTGAGAGATGCACCGTTTGCCCTCCAGGATTCTTTCTGGTTGCTCAGTGTTCAACTCATTCTGATAGGATCTGCCAGGACAGAGACGAATGCCTAGAGATACCAAACCTTTGTAAAGAACACAACCAGTGCCTCAACACTCCAGGAGGGTTTCGATGCTCCGACATGTCGGAGAGACTAGCAGCTGCTGGGATTTGTGGCCACTCTTATTTTTACAACTCTGAGATGGAGGAGTGTCAAGCTTGTACAGAATGTGATTCTCAGCCAATGATATCCCCATGCTCAGCGGTGAGTGATGCAGTGTGTGCCAACCCATCCGAAAGCAAACTCTCTCTGTCCTGGTCAGGAAGTGTCGACCTTCCTAAGGGTAGTGAGCTTACTGATAAGCAACTTCACATCCGTGGCAACAGCGATGGACGCCTTCTTTCCTGCACGGATGGTTGGATAGTCCTATACCAGCATGGTCTTGTTTGGGTTGACCATAACCTTGCTTTAAAACATGGCTGCCGCAGCTTTGTTCAAGCGTGTTTACGATTGAATGCCAGTGAAGATGGAGGTCGGGATTTGAGTGGTATGCGTTTGGAGCAGCGGGACACCAGGTCTCTCCAAAGTGCCAGTGTGAGTGGAGCCACGGCCGTGGAGCCGGGACACATACTTTACCTTTCACTCAAGAGTGCCACCAACCAGTGTAGCCAAAACAATGATGACGTCCACCTGCAGGGCAGCCTATTGTCACCTTTCAGTCTGCTCTGGTTGTCCCATGACACGGGTGCAGTGGCTATGACTGCCCAGGCCGTTGCCTCTGCACATTACCACACCAACTACCGTCCTGCCTTCCGGACGTCATCCATCTCTGACCCCTATGTGGTCAGCCTGACTCATGACAATCGTGGTGTCCGCTTCAGGGAAAGTGGCACTGTGAAGTTTGTCCTTCAGCAAGCATTGTACTCCATGGGTCAAGCCTGCATCTCAGAGGGTTTCTACTTACTTGCATACCTGAACCGCAACGGGAGCAGTGCTGAGCTGACTCGTGCATTCAAGCCTGGCGTTCACTACAGAGACACATCCATATCTCTGTCAGCTGCCACCACTGTGGATTCTGGAGATATGCTCACCTTCGAGATCCTCGCGCCTACACAGTGCAACGTTCGCTACTTCGGCGATGACTCTGGGATTAGCATTCTCAGTCTTCTTTGGATCCCTTCTTCGATGTCCACAGCCTTGTCGGCTTCTGTGTCGAGGAAAGGTCTTCCTACAGGTGCAGTTAGGAATAAGGCCTTGTTCTTCCATCAGACGACTACATCAGTTAAACAGGTCGCACTTGCTGGAACCAAAGATCACAGAGACTTCATCTTTCGGGAAGCTGGGACAGCTAGCGTGGCCTTAGATCTCCGGCTTATCCATTCTTGCAGTTTAATTAAACTCACCTTGCTTCAGCAGAACGGGTCTCAGGGGGTTCAACCAGCTCCTGTAGCTCAACAAATCGGTGGGCAAATGCCAGAAGGAAGTTTGTGGGCAAGTGTGGGACTGAGGGTATCGTTTCAGGTGCTTAATGGCACTGTAATCTTTGCTACAGTGGATTGTGTGAGGGGGCGCATTAATCAAATTGCCTATGATGCCGGAAGTAGCATTTCTATCCTATGGGCTGCTGCATGATCTTAGCATGATTCAGTTAGCATGCAGATCTGTGTACTTTATGAAttaagcctgttttttttttgttatgttttatttcgggattaattagttaataaatagGATTAATGAACTTTTACAGCCAAAACAATAAATTGCTTTAGAGtagattattatgcatttttaaatggaaaaaagttaacaaaatttgacttttttatgattatttacacattttaatgtGACTGTTGTATGTTTTGATTCCATAAGTTTTGTATAACATTTTCCTttcattatggtggcttgagaaagccaacatactgttatactacataaacttatCCTTCTTCC

Function

symbol description
si:ch211-252f13.5 Predicted to enable calcium ion binding activity.

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-629 Predicted to enable calcium ion binding activity.

Ensembl:

ensembl_id ENSDARG00000097535

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031923 True 2961 mRNA 0.47 4 9848636 9857932

Neighbor

gene id symbol gene type direction distance location
XLOC_016179 ap2m1a coding downstream 29925 9789811 ~ 9818711 (-)
XLOC_016178 NA coding downstream 100420 9746437 ~ 9748216 (-)
XLOC_016177 dvl3a coding downstream 104555 9702053 ~ 9744081 (-)
XLOC_016175 selenot1a coding downstream 152353 9684305 ~ 9696283 (-)
XLOC_016176 CU633992.1 coding downstream 160451 9688055 ~ 9688185 (-)
XLOC_016181 BX470264.1 coding upstream 4901 9862833 ~ 9863388 (-)
XLOC_016182 abi1b coding upstream 10669 9868601 ~ 9915870 (-)
XLOC_016183 zgc:55943 coding upstream 100149 9958081 ~ 9971728 (-)
XLOC_016184 CR956623.2 coding upstream 103936 9961868 ~ 10014821 (-)
XLOC_016185 imp3 coding upstream 125147 9983079 ~ 9989947 (-)
XLOC_016169 CR385076.1 non-coding downstream 441961 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1007752 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 1213504 8634240 ~ 8635132 (-)
XLOC_016199 CR450845.2 non-coding upstream 1047130 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1472792 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1479108 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1699043 11556975 ~ 11558124 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01917089_01920203 NA coding CI01000004 null 1915626 ~ 1920705 (+)