XLOC_016182 (abi1b)


Basic Information

Item Value
gene id XLOC_016182
gene name abi1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9868601 ~ 9915870 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031925
AATGCCAGGCGAGGGACCTCCTGTTGGAGAGTGAAGCTCCGCTGGTTTCAATGAAAGAGGGGGAGAAGAGTAATGCAGAGGGATGTAAGATGGCAGAGCTACAAATGTTGTTAGAGGAAGAAATCCCAGCAGGAAAAAGAGCCCTTGTGGAGAGCTACCAGAACCTTTCAAGGGTTGCGGAATATTGCGAGAACAATTATGTGCAGGCACAAGACAAGAGGAAAGCCCTCGAGGAGACCAAAGCCTACACCACCCAGTCCCTGGCAAGCGTGGCCTATCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGTTGGATATTCAGGCTTCACAGCTGCGCAGGATGGAGTCCTCCATCAACCATATCTCTCAGACTGTGGACATTCATAAAGAGAAAGTCGCCAGACGAGAGATCGGGATTCTCACCACCAACAAAAACACGTCTCGGACCCACAAGATCATCGCCCCGGGCAACATGGAGCGACCCGTGCGCTACATCAGGAAGCCCATAGATTACACCCTGCTGGATGATGTGGGTCACGGTGTTAAACAAGGGAATAACCAACCGGCTCGGGGAGGTGGAGGAACATTATCCAGGACCAACCCACCAACACAGAAGCCCCCAAGTCCACCCATGGCAGGGAGAGGGACCCTGGGACGAAACACTCCATATAAGACTCTTGAGCCAGTCAAGCCTCCTGTGGTGCCTAATGACTACATGACCAGTCCAGCACGCCTGGGCAGCCAGAACAGCCCGGGACGCACAGCCTCACTCAACCAGAGACCCAGAACACACAGTGGCAGTAGTGGGGGCAGCGGCGGTCGGGAGAACAGCAGTAACAGTATGGGAATCCCTCTGGCCGTGCCTACACCCTCCCCTCCCAGTATGGCACCAGCAGTTCCTCCAGGTCCAGGTTTGGGCCCAATCCCGATGTCTCAGTTTGGAACGATTTCCCGGCAGATCTCCAGACACAATTCCTCCACCACTTCTTCTTCCGCCTCTATGGTGTCAGCCACCGGGACCTACCGCCGCGCCCCTGCCAGCTCCTCCCAGTTCTCTGTGCCTCAGCCCCACCTAAACGGGGGTCCCACATTCCCTCAGACCACAATGACTGTCGCTCCACCGCCGCCTCCAGTGGTGCAGCTGACGCCCCAGATTCCCCTCACTGGCTTTGTGGCCAGAGTTCAGGAGAACATAACAGACAGTCCATCTCCACCACCGCCGCCTCTTCCTGAGGACACGCCCCTGTTCGAGGAAGCAGCCCCGCCCCCTCCACCCCCACCTGTGGATTACGATGAAGAAGATGCTGCTCTGGTGCATTACAATGACCCCTATGCTGATGGAGACCCTCACTGGGCCCCAAAATCCTACATAGAAAAGGTGGTGGCTATCTATGACTACTCAAAAGACAAAGACGACGAGCTGTCCTTCATGGAGGGCGCCATCATCTACATCATCAAGAAGAACGATGACGGCTGGTTTGAGGGTGTGTGTAACGGTGTGACCGGACTGTTTCCTGGTAACTACGTCGAATCCATCATGCACTACGCTGACTAATACCCAATCCCAGAGACATGCAGCGCAGCCAATCAGTTACAAGCATTGCAAAGTGCATTAGGATATGACTGAATGTGACAATGTTTTTGTCCAATCGCCAATGTATCAAGCATCTACAGTGCTCACTGTTTGAGGAAACGGGGCTCGTATCGCCTCCGCAAAGAAACAAACAAGTCTCAATTCTTTCTGGTTAGGTTGCCTCATGTGTTTTGTACATATATTGCAGTGACACGTTGCCTGTAGGCTGTTGCTAGTGTTTGTTTTGTGCGTGTTTCGTCATTGTACTGAGATCGTATTTGCCAAGTGTCAGCCAGGGctagttagtttttatttttttatcatttttgtttttgctcaTCTTTATTTAAACTCTAATGCTCTTCCTTTGTGTGAGGAGGAAGTGTTTGAATGTCATTATTATGCCGGCTAAAtaattaggcaaaaaaaaaaaaaaaaa
>TCONS_00031926
GCGCTGGGCTGAGAATTGTCGTGCTGCTGTAAAAGAGGAGCCAACGGGAATCCCACAATGCCAGGCGAGGGACCTCCTGTTGGAGAGTGAAGCTCCGCTGGTTTCAATGAAAGAGGGGGAGAAGAGTAATGCAGAGGGATGTAAGATGGCAGAGCTACAAATGTTGTTAGAGGAAGAAATCCCAGCAGGAAAAAGAGCCCTTGTGGAGAGCTACCAGAACCTTTCAAGGGTTGCGGAATATTGCGAGAACAATTATGTGCAGGCACAAGACAAGAGGAAAGCCCTCGAGGAGACCAAAGCCTACACCACCCAGTCCCTGGCAAGCGTGGCCTATCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGTTGGATATTCAGGCTTCACAGCTGCGCAGGATGGAGTCCTCCATCAACCATATCTCTCAGACTGTGGACATTCATAAAGAGAAAGTCGCCAGACGAGAGATCGGGATTCTCACCACCAACAAAAACACGTCTCGGACCCACAAGATCATCGCCCCGGGCAACATGGAGCGACCCGTGCGCTACATCAGGAAGCCCATAGATTACACCCTGCTGGATGATGTGGGTCACGGTGTTAAATGGCTCAAAGCAAAGCAAGGGAATAACCAACCGGCTCGGGGAGGTGGAGGAACATTATCCAGGACCAACCCACCAACACAGAAGCCCCCAAGTCCACCCATGGCAGGGAGAGGGACCCTGGGACGAAACACTCCATATAAGACTCTTGAGCCAGTCAAGCCTCCTGTGGTGCCTAATGACTACATGACCAGTCCAGCACGCCTGGGCAGCCAGAACAGCCCGGGACGCACAGCCTCACTCAACCAGAGACCCAGAACACACAGTGGCAGTAGTGGGGGCAGCGGCGGTCGGGAGAACAGCAGTAACAGTATGGGAATCCCTCTGGCCGTGCCTACACCCTCCCCTCCCAGTATGGCACCAGCAGTTCCTCCAGGTCCAGGTTTGGGCCCAATCCCGATGTCTCAGTTTGGAACGATTTCCCGGCAGATCTCCAGACACAATTCCTCCACCACTTCTTCTTCCGCCTCTATGGTGTCAGCCACCGGGACCTACCGCCGCGCCCCTGCCAGCTCCTCCCAGTTCTCTGTGCCTCAGCCCCACCTAAACGGGGGTCCCACATTCCCTCAGACCACAATGACTGTCGCTCCACCGCCGCCTCCAGTGGTGCAGCTGACGCCCCAGATTCCCCTCACTGGCTTTGTGGCCAGAGTTCAGGAGAACATAACAGACAGTCCATCTCCACCACCGCCGCCTCTTCCTGAGGACACGCCCCTGTTCGAGGAAGCAGCCCCGCCCCCTCCACCCCCACCTGTGGATTACGATGAAGAAGATGCTGCTCTGGTGCATTACAATGACCCCTATGCTGATGGAGACCCTCACTGGGCCCCAAAATCCTACATAGAAAAGGTGGTGGCTATCTATGACTACTCAAAAGACAAAGACGACGAGCTGTCCTTCATGGAGGGCGCCATCATCTACATCATCAAGAAGAACGATGACGGCTGGTTTGAGGGTGTGTGTAACGGTGTGACCGGACTGTTTCCTGGTAACTACGTCGAATCCATCATGCACTACGCTGACTAA

Function

symbol description
abi1b Predicted to enable SH3 domain binding activity. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI1 (abl interactor 1).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0030027 lamellipodium cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0030296 protein tyrosine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1182 Predicted to enable SH3 domain binding activity. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI1 (abl interactor 1).

Ensembl:

ensembl_id ENSDARG00000062991

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031925 False 2016 mRNA 0.52 10 9868601 9915814
TCONS_00031926 True 1630 mRNA 0.55 11 9869058 9915870

Neighbor

gene id symbol gene type direction distance location
XLOC_016181 BX470264.1 coding downstream 5213 9862833 ~ 9863388 (-)
XLOC_016180 si:ch211-252f13.5 coding downstream 10669 9848636 ~ 9857932 (-)
XLOC_016179 ap2m1a coding downstream 49890 9789811 ~ 9818711 (-)
XLOC_016178 NA coding downstream 120385 9746437 ~ 9748216 (-)
XLOC_016177 dvl3a coding downstream 124520 9702053 ~ 9744081 (-)
XLOC_016183 zgc:55943 coding upstream 42211 9958081 ~ 9971728 (-)
XLOC_016184 CR956623.2 coding upstream 45998 9961868 ~ 10014821 (-)
XLOC_016185 imp3 coding upstream 67209 9983079 ~ 9989947 (-)
XLOC_016186 fam78ba coding upstream 140230 10056100 ~ 10062575 (-)
XLOC_016187 bcl6ab coding upstream 171464 10087334 ~ 10098191 (-)
XLOC_016176 CU633992.1 non-coding downstream 180416 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 461926 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1027717 8835922 ~ 8840884 (-)
XLOC_016199 CR450845.2 non-coding upstream 989192 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1414854 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1421170 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1641105 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 1844956 11760826 ~ 11767204 (-)

Expression


Co-expression Network