XLOC_016185 (imp3)


Basic Information

Item Value
gene id XLOC_016185
gene name imp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9983079 ~ 9989947 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031931
AGAAAACCACAGTGAATAAAAAGCACGCGTGCGTAAGCTGAAGTGAGCAAGTTATTAACACGTTTAGCCATAAATATAGCCCGTGTTTTTTAGCAAAATGGTACGTAAATTAAAATTTCACGAGCAGAAACTCTTGAAGAAAGTTGATTTTATTAACTGGGAGGTTGACAACAATATACACGAGGTTAAAGTGTTGAGAAAATACCATATTGAGAAGAGGGAAGATTATACCAAATACAACAAACTTAGTCGAAATATCAGAGAATTGGCGCAGAAAATACGGGACTTGGACGCAAAAGATGGATTCAGATCTCAGAGTACAGCCCTTTTCTTGGAAAAACTATACAGTGTCGGTTTGATTCCCACCAAACAGAACCTCTCTCTCGCAAATGAAGTGTCAGCATCTGCATTCTGCAGGAGGCGGCTTCCCACAATCATGCTGAAACTGCGCATGGCTCAGAACCTAAGGAACGCCATCACCTTCATTGAGCAGGGCCATATTCGTGTTGGGCCAGAAGTCATCACTGATCCTGCATTTCTTGTAACAAGAAATATGGAAGATTTTGTCACATGGGTGGATTCCTCCAAGATCAAACAACATGTCATGAACTACAATGAGGAGcgcGATGACTTTGACCTCATGGCCTAAATCTCCAAGTGAAATGAAAATTTGGATTTCATCCAGAAATTCACTTGTGATTCTTTAATAATGCACAGATACATATTTATTTCCTGCTCCACAGAAGCGAGCATTTATCATTcttgaaaaagtgagtaaatgtatttgatttttgTTATTGTGCATCATTtgtaaacaaaacttttttttccagaatttAGTTGTTTCTAAAAAACTACCTtcacattttacaaataaatcaCAACTTAACCCACAAGGTATACC
>TCONS_00031932
GTGCGTAAGCTGAAGTGAGCAAGTTATTAACACGTTTAGCCATAAATATAGCCCGTGTTTTTTAGCAAAATGGTACGTAAATTAAAATTTCACGAGCAGAAACTCTTGAAGAAAGTTGATTTTATTAACTGGGAGGTTGACAACAATATACACGAGGTTAAAGTGTTGAGAAAATACCATATTGAGAAGAGGGAAGATTATACCAAATACAACAAACTTAGTCGAAATATCAGAGAATTGGCGCAGAAAATACGGGACTTGGACGCAAAAGATGGATTCAGATCTCAGAGTACAGCCCTTTTCTTGGAAAAACTATACAGTGTCGGTTTGATTCCCACCAAACAGAACCTCTCTCTCGCAAATGAAGTGTCAGCATCTGCATTCTGCAGGAGGCGGCTTCCCACAATCATGCTGAAACTGCGCATGGCTCAGAACCTAAGGAACGCCATCACCTTCATTGAGCAGGGCCATATTCGTGTTGGGCCAGAAGTCATCACTGATCCTGCATTTCTTGTAACAAGAAATATGGAAGATTTTGTCACATGGGTGGATTCCTCCAAGATCAAACAACATGTC

Function

symbol description
imp3 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034457 Mpp10 complex cellular_component
GO:0019843 rRNA binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1062 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

Ensembl:

ensembl_id ENSDARG00000115266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031931 False 904 mRNA 0.38 7 9983079 9989947
TCONS_00031932 True 576 mRNA 0.41 6 9983985 9989919

Neighbor

gene id symbol gene type direction distance location
XLOC_016183 zgc:55943 coding downstream 11351 9958081 ~ 9971728 (-)
XLOC_016182 abi1b coding downstream 67209 9868601 ~ 9915870 (-)
XLOC_016181 BX470264.1 coding downstream 119691 9862833 ~ 9863388 (-)
XLOC_016180 si:ch211-252f13.5 coding downstream 125147 9848636 ~ 9857932 (-)
XLOC_016179 ap2m1a coding downstream 164368 9789811 ~ 9818711 (-)
XLOC_016186 fam78ba coding upstream 66153 10056100 ~ 10062575 (-)
XLOC_016187 bcl6ab coding upstream 97387 10087334 ~ 10098191 (-)
XLOC_016188 dmbx1a coding upstream 193693 10183640 ~ 10192487 (-)
XLOC_016189 gng12a coding upstream 297186 10287133 ~ 10338813 (-)
XLOC_016190 wls coding upstream 352230 10342177 ~ 10386738 (-)
XLOC_016178 NA non-coding downstream 234863 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 294894 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 576404 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1142195 8835922 ~ 8840884 (-)
XLOC_016199 CR450845.2 non-coding upstream 915115 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1340777 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1347093 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1567028 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 1770879 11760826 ~ 11767204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01855598_01856473 IMP3.L, IMP3 coding CI01000004 null 1855351 ~ 1856524 (+)