XLOC_016186 (fam78ba)


Basic Information

Item Value
gene id XLOC_016186
gene name fam78ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10056100 ~ 10062575 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031933
ATCAAAACtaaaaagtatgtttttaatGCCGTTAATATTGCTCATTATTAGTACAAATTTAGAGCgccgtgtttatttttttatgtaaaccaAAGCATGATTTTCTCGCGCGATCTGGCAACACTGATCAGCACCTCTCCGCAACTGAACAGCGACCATATAAGCACATGTCTGCGTTAAGATGCTCTGCTGTTTTTCCTAGGAGGAAtacatttaaaaaccactgcGCTGTGTATTGTAGCATGCTCTGTAATTAGGGATTATTAAGATCGTCTTCATCGTCATTATCTTTATGTTCTCGAAAGATTTGCACAAGGGTTCTTCGCTACGGATGCAAAGATGGAAACACACAAAGGATAAACACAAAATTAGTCCAGCGATGCCCATGACAGACATTGCGTTTTAATCAGAGCGCAGCTGACCCAGGGTTGCATTATAAATCAAATGCACTGAATCCCTCCTTGATTGGATCGGTCTCTGTGTCGCTTCCCCCTTTCGAAAGGAGCCGCATCAACAAAACGATGGGTAGGTCGTTCACCTGGAGGAAATACAACCAACATACACTCTCTATGCAGCACCGGCTCCCTATTCAGCACTGAGATGCCTGCGCCCAGCAGAAAGACCAGGATCAAAGGGCTCAGAGCTACAGCCGGACGCGTGATTTGGAAGGAGGACAACAAACAGGCGAACCCCGGGTGTCCGATTCGGTGGAGGCCGAATCACATCTGCTGGGGACGAGCATCAAGGGCAGTGCGGCACTCCAGCGCCCCGGGAACAGGCGACACGAATCATCCATACACCTTTAGTTCCACAACACCGCAGCGTTCCTCGTCTGTTTCGAAGATGCGCTAGAACAACACCGACACgcaacaaaacatgtcttttCGTAGCAGACGTGCTTTTTTATTGCTTTCACTCAGTGGATTTATCGAGGATATAGCCTACTGAGTTGGAAACGATGGTGAGGAGAATCTGCCAGCGTTTCAGGGGTTACAAAAAGTGCCAATGAATATATTGCTTAAATTTATCCTCATTTTTCCGTCATTGGCTACATTGACACCCCTGATAAGCAGGACCATGGGTTGCATTCAAAGCATCGCCTGCAAGCCCCGCATCCGACGGGAGAACATAGTGGTCTATGAGGTCTCAGCCTCCATTGACCAATGCCCGACCATCATTGAGGAGAATTCGCCCATCGTCCTGCGATACAAGACCCCGTATTTCAGAGCATCGGCGGGGATCGTGATGCCCCCGGTTCCTAGAAACGAAACGTGGACTGTGGGCTGGATCCAGGCGTGCACCCAAATGGAGTTCTTTAACACATATGGTGATATTGGCATGTCCAGCTGGGAGTTGCCCGAGCTTCGGGAAGGACGGGTGAAGGCCATAAGTGATTCCGACGGTGTCAGTTATCCCTGGTACGGCAATACTACCGAAACAGTGACCCTCTCAGGCCCCACTTCCAAACCGTCTCGGCTAACCGTGAGCATGAACGACAACTTTTACCCCAGCGTGACTTGGGCAGTGCCCATCAGCAACAGCAACACCCCCATGCTCACACACATCACCCGAGACCAGAGCTTCATCACCTGGCTGGTGGCGCTAAACGCAGACACCAAAGAGCGTATTGTTCTTCAGACAGTACGGTGGCGTATGCGGGTAGACATTGAGGTGGATCCATCCATGCCACTTGGTTCTCGTGCCAAACTGATGGGACGACCGCACCAGGAACAGCCTCACATTCTCAGCAACAATGAGCCTATCCCACCTAATGCACTGGGCAGGCCTAATGCCAATGATGCCCAAGTGCTGATGTGGAGACCCAGAAGAGGACAACCTCTGGTGGTTATACCGCCCAAATAGGACTGTCATGACAGTGCCTACAGGACACTGGAGACTGCATGCACTGTTTAGATGCTGGAATTTGGTATATCGCAAGCTGCTTTGTGGATCGCTGGATTTGTTGAGTTTCTCACGACGTTTTGACTGCCTTTAAACTTTTCAACAGGTACTAAATGTGCAGCCAGATGGAACAAACCCCTTAAGTTTAAGAactagttcacctaaaaaatgaaTATTACTAACCCTCTTGTAACTGTTAtgaagaacgcaaaagaagatattctgaggaATGTTTTAGTAATACAATGAAACTCAGTGAAGTCCCAAAAtgtaaacctttaaaaaaaaaaaaaggggaagCATGATATTATAAATAGATCAGAATGAAATCCTTTATTTATTCTAAAATCAAATGATTTATCGATGCACATGTACGTAAGCTGCATCCCCATTCAGAGGCAGCAGCCGAAAGCAGATTTCATTACAACAGAGCGAC

Function

symbol description
fam78ba Is expressed in heart. Orthologous to human FAM78B (family with sequence similarity 78 member B).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-140227-3 Is expressed in heart. Orthologous to human FAM78B (family with sequence similarity 78 member B).

Ensembl:

ensembl_id ENSDARG00000063018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031933 True 2338 mRNA 0.47 2 10056100 10062575

Neighbor

gene id symbol gene type direction distance location
XLOC_016184 CR956623.2 coding downstream 41279 9961868 ~ 10014821 (-)
XLOC_016185 imp3 coding downstream 66153 9983079 ~ 9989947 (-)
XLOC_016183 zgc:55943 coding downstream 84372 9958081 ~ 9971728 (-)
XLOC_016182 abi1b coding downstream 140230 9868601 ~ 9915870 (-)
XLOC_016181 BX470264.1 coding downstream 192712 9862833 ~ 9863388 (-)
XLOC_016187 bcl6ab coding upstream 24759 10087334 ~ 10098191 (-)
XLOC_016188 dmbx1a coding upstream 121065 10183640 ~ 10192487 (-)
XLOC_016189 gng12a coding upstream 224558 10287133 ~ 10338813 (-)
XLOC_016190 wls coding upstream 279602 10342177 ~ 10386738 (-)
XLOC_016191 scinlb coding upstream 334004 10396579 ~ 10450784 (-)
XLOC_016178 NA non-coding downstream 307884 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 367915 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 649425 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1215216 8835922 ~ 8840884 (-)
XLOC_016199 CR450845.2 non-coding upstream 842487 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1268149 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1274465 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1494400 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 1698251 11760826 ~ 11767204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_01823571_01825813 FAM78BA, FAM78BB, FAM78B coding CI01000004 null 1823571 ~ 1826766 (+)