XLOC_016190 (wls)


Basic Information

Item Value
gene id XLOC_016190
gene name wls
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10342177 ~ 10386738 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031940
GCGCGCAACGCAGGCAATTGACTAGGGTTTGAGACGCGCTCTCAATCTCGGGCAGCGCACTGGTCCACCTGGATGCCGTGAATTTCGCCTGCTTGCTTTCAATCCTGTCTGAAGACGCACTTTGAAAATGGCTGGGGCAATTATTGAGAATATGAGCACCAAAAAGTTGGTGATTCTGGGAGTGATTCTCATGTTATTCCAAGCGTTTTCCTTTATGGTCGGAGGGCTGATTGCTCCGAGCCCCACCGCTGCCGTTTCCTATCTGGCCACCAAGTGTGTGGACAATGAGAAGACCCACCATAAGAACCCCAAGTGGTTCACGCCATGGGGCCCGGACCAGTGCAGCAAGATCAAAGACTTTGATGAGGCCATGGTCAAGAAAATCGAGGCTAACAATATCGTGTTTGCCATCCACATTCCCCCGCCCAACACAGAGATGAGTACCTGGTTTCAGTTCCTGTTGTTGATCCTCCATTTCGACATCGCCTTCAAAATTCAAAACCAGATTGCGGATGGAGCTTCGATCACCATTGATGTCAGGCTGGCCTACAGAGACGACAAACTGAGCGAGTGGACACAGATGGCCCATTCCGTAGAGCAACGCAAACTCAGCTGCAATTTCACTGCAGCAAAGACTATAGAAAATGAGGGTCGCCTCTATGATTGTGACCTGTTGCCCTTTATGGAGCTTGGCAGTGTGGCCCATAAGTACTATCTTCTCAATGTCCGACTGCCTGTTAATGAACGAAAAAAGGTCAACATCGGGATTGGAGAAATCAACGACATGCGTCTTGTGGGCATTCATCAAAATGGTGGCTTCACCAAGGTTTGGTTTGCCATGAAGACGTTCCTCACTCCCAGCGTCCTTATTATTATGATCTGGTACTGGAAGAGAATCACTCAGATGACCAGACCACCTGTCCTGCTGGAAAAGGTCATCTTCGCTCTGGGAATCTCCATGACCTTCATAAATATCCCAGTGGAGTGGTTCTCTGTGGGCTTTGACTGGACCTGGATGCTGCTGTTTGGTGACATCCGTCAGGGCATCTTCTACGCCATGCTGCTCTCCTTCTGGATCATCTTCTGTGGAGAGCACCTCATGGACCAGACTGAGAGGAACCGCTTTTCAGTGTACTGGAAGCAGGTTATACCCATTGTCTTTGGCTCCTTCTGCCTTTTCATATTTGATATGTGCGAGAGaGGAGTACAGCTAAAGAATCCTTTCTACAGTATCTGGGCATCAGATGTCGGGACAGAACTGGCTATGGCCTTCATCATTGTCGCAGGAATCTGTGCATGCCTCTACTTTTTGTTCCTGTGCTTCATGGTGTTCCAAGTGTTCAGGAACATCAGCGGGAAAAGGTCGTGTTTGCCTGCTATGACTAAGGCTCGTCGACTGCACTATGAGGGTCTCATCTTCCGCTTCAAATTCCTGATGTTGGTCACGCTAGCATGTGCTGCCATGACTGTCATTTTCTTCATCATAAGCCAGGTGAGTGAGGGTCACTGGCTCTGGGGCGGGCACACGGTTCAGGTGAACAGTGCCTTCTTCACTGGCATCTATGGAATGTGGAACCTTTACGTGTTTGCCCTCATGTTTCTCTACGCACCGTCGCACAAACGCTATGGAGATGAGCAGTCAAGCGctgatcaggctggaaaCAGCGGTGAAGACACACAGCTGACCACCACCATCACACATGTCGACGGACCCACAGAGATCTACAAAATGACTGGCAAAGAAGCTCAAGAATAACCTCTACCCAGAGTTCAACACGCGTCTCAAGTTCTGCTTTTGTGTGTCCTGTTTGGTCCCCTGCATTTCAGACAAATATAAACCGATATTAAGCCTCTTTTTTTCAACGTTTGATTTCCATCCCACTGCGTGTCAGTTTAAGAACAGCTGCTTGTGGAGAAAAAAAGTGGAGTTGCACACCATCTTGTGGGTGCAAGAAGAAATTCAGAAGCCGTTCTCGCATTGTGGATGGAAAAAGACACTGGTGTTTTGCAAGGACCAATACATGGAGGAAAGAAAAAACAAGGTCCTTTTCCTATAATCACGCAGCAATTATTTCCTGCTTCTATATTTTGTATCTGAGATAATGGCTTTCCCTTCATTTCTTAACCTCAAAACAAGGAAGAACAACACTGTCAACATGCTGTATAGTTACTTATGTTTCTGTCAGTTGATCCTTCCTCATCTGACTTCCTTAAACACTCCCTGCCAAATGTAAACACGGTATAAACATGAATGACTGAGTTCAAACCAAGAGCTAGGGACGGACGTCACTTCACGTACCAATAGATAGATTCAGGTCCTTATGTTCTGAATGGCAAACACTATGTTCATTATGTTACGATGTAGAGATCTATTTTTTATAAAGTGCTTATTTTCATCTGTATGAAAGTATTAGTGGCTGTATTGTATCATCTTTTTGAGGTTTTTCGATTATATCACATTGGAAATTtagggttttgtttgttttttcatgctttttatgcaaatttaaataataaaaaacacattttagattTGCTTGGTTAA

Function

symbol description
wls Predicted to enable Wnt-protein binding activity. Acts upstream of or within several processes, including animal organ development; chondrocyte activation; and chondrocyte proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Predicted to be integral component of organelle membrane. Is expressed in several structures, including central nervous system; head; inner ear; midbrain neural keel; and neural tube. Orthologous to human WLS (Wnt ligand secretion mediator).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0060872 semicircular canal development biological_process
GO:0001503 ossification biological_process
GO:0044566 chondrocyte activation biological_process
GO:0021986 habenula development biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0035988 chondrocyte proliferation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0061355 Wnt protein secretion biological_process
GO:0001957 intramembranous ossification biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0001958 endochondral ossification biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031301 integral component of organelle membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2161 Predicted to enable Wnt-protein binding activity. Acts upstream of or within several processes, including animal organ development; chondrocyte activation; and chondrocyte proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Predicted to be integral component of organelle membrane. Is expressed in several structures, including central nervous system; head; inner ear; midbrain neural keel; and neural tube. Orthologous to human WLS (Wnt ligand secretion mediator).

Ensembl:

ensembl_id ENSDARG00000009534

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031940 True 2545 mRNA 0.46 12 10342177 10386738

Neighbor

gene id symbol gene type direction distance location
XLOC_016189 gng12a coding downstream 3364 10287133 ~ 10338813 (-)
XLOC_016188 dmbx1a coding downstream 149690 10183640 ~ 10192487 (-)
XLOC_016187 bcl6ab coding downstream 243986 10087334 ~ 10098191 (-)
XLOC_016186 fam78ba coding downstream 279602 10056100 ~ 10062575 (-)
XLOC_016184 CR956623.2 coding downstream 327356 9961868 ~ 10014821 (-)
XLOC_016191 scinlb coding upstream 9841 10396579 ~ 10450784 (-)
XLOC_016192 ccdc18 coding upstream 81061 10467799 ~ 10564019 (-)
XLOC_016193 BX323564.1 coding upstream 211072 10597810 ~ 10600950 (-)
XLOC_016194 mtf2 coding upstream 216812 10603550 ~ 10641998 (-)
XLOC_016195 rpl5a coding upstream 300538 10687276 ~ 10703621 (-)
XLOC_016181 BX470264.1 non-coding downstream 478789 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 593961 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 653992 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 935502 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1501293 8835922 ~ 8840884 (-)
XLOC_016199 CR450845.2 non-coding upstream 518324 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 943986 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 950302 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1170237 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 1374088 11760826 ~ 11767204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_03378562_03405135 WLS coding CI01000004 null 3378562 ~ 3406001 (+)
bowfin (Amia calva) AMCG00004924 wls coding CM030140.1 CM030140.1 9663323 ~ 9684123 (+)