XLOC_016191 (scinlb)


Basic Information

Item Value
gene id XLOC_016191
gene name scinlb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10396579 ~ 10450784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031941
TCTGCAAACACTTCAGCTTTTCTCCTGCACTGCCAGCCGTCTGCATCTGCCACAGCCTCTCACTATGGTGTCCCACAAGGAGTTCACGACTGCCGGAAAGGTTTCTGGTCTGCAGGTGTGGCGGATTGAGAACATGGACCTGAAACCGGTGCCCAAAAATCTTCATGGCAGCTTCTTTACAGGGGATGCCTACATTCTGCTGCACACCACCAGCGCACCCTCCTACTCTATCCACATGTGGCTGGGGAATGAATGCTCTCAGGATGAAAGTGGTGCGGCGGCCATCTTCTCCACACAGCTGGATGACTTTCTTGGTGGCAGCCCTGTTCAGTTCCGCGAGGTCCAAAACAACGAGTCGCTCACCTTCCTGGGTTACTTCAAGTCCGGCATCAAGTATATGCAAGGTGGAGTTGCGTCTGGCTTCCATCACGTGTCGACCAATGATGTGAATGTGAAACGTCTGCTGCACATTAAGGGCAGGAGGGTCATCAGAGCTACAGAGGTGGCGATGTCCTGGGCCAGCTTCAACAAAGGAGACTGCTTTATCGTCGACCTGGGGAAGGATATTTATCAGTGGTGTGGCAGTGGCTGCAACCGATTTGAGCGTCTGAAAGCCTCCAAGCTGGCTATTGATATCCGGGACAACGAGAGGAACGGCAGAGCCAAGCTGGTCATGGTGGAGGAGGACGCTGAACCAGACGCCCTGATTCAAGCTCTCGGGCCCAAATCCGAAATCGCCCCTGCAACTCCAGACGATGAGCAAGTAGAAATCTCCAACAAGAACAAGGGGAAACTCTACATGATCTCCGACGCCTCTGGCTCCATGAAAACAACAGAGGTGGCAGAGAAAAGCCCATTCAAGCAGGAAATGCTAATCAATACAGAGTGCTACATCCTAGACAATGGAGTCGACAACAATGTGTTTGTGTGGAAAGGATCAAAAGCAACCACATCTGAACGTAAAGCAGCCATGAGTGCAGCGGAGCAGTTCATCAAAGAGAAGAACTACTCCAAAAAAACAATGATCCAAGTTCTGCCTGAAGGGGGCGAGACCACCCTGTTCAAGCAGTTTTTCTCTGACTGGAAGGACAAGTATCAAACCACTGGCCCTACAAAGGCCTACACTATTGGCAAAATAGCCAATGTGGAGCAGATTCCTTTTGACGCCTCCAGCCTCCATGACAACAAGACCATGGCAGCCCAGCACAACATGGTGGATGATGGTTCTGGAAAAGTCGAGATCTGGCGTGTAGAGGAAGGAGCTCGTGTGCCGGTGGACCCCAAGACCTATGGCCAGTTCTTTGGTGGAGACTGTTACCTGATCCTCTACACCTACAAAAAGGAAACCAAAGATCAGTACATCATCTACACCTGGCAGGGGCTGAAGTGCACTCAGGACGAGCTGGCAGCTTCTGCTTTCCTCACAGTCCAGCTGGACGACTCCATGGGGGGAGCTCCAGttcagGTGCGTGTGACACAGGGTCATGAACCTCCTCATCTGATGAGTCTGTTCAAGGGCAAACCAATGATAATTCATGCTGGAGGGACGTCCCGCAAAGATGGCCAGACCAAGCCGGCTGCCACACGCCTCTTCCACATCCGGCAGAGCACTTCTAAAGCCACTCGTGCTGTTGAGGTTGAACCATCTGCAGCTAGCTTAAACACCAATGATGTGTTTGTGCTGAAGACGTCCggaggtgtgtttgtgtggaaaGGGGCAGGAGCCAGTGATGAAGAAATGGCTGCCGCCAAGTATGTTGTGAGTGTGCTTGGAGGACAATCCACAGATGTGCCAGAGGGTAAAGAACCAGAGTCATTCTGGGCGGCTTTGGGAGGGAAAAAGGACTATCAGAAATCCCCAGCTCTTCAACGTACTATCAAACCTGCACGTCTGTTTGGCTGCTCCAATAAAACTGGCCGGCTAGTTGTTGAGGAGGTTCCTGGAGATTTCACTCAGTCAGATCTGGCCACCGATGATGTCATGTTGCTTGACACCTGGGATCAGATCTTTCTTTGGATTGGTAATGAAGCCAATGAAGTCGAAAAAACTGGGTCACCAAAAATCGCTAAAGATTATGTGGAGTCTGATCCCGCTGGCCGTTGCGGGCTGGCCATTACTACCATAAAGCAGGGGTCCGAGCCTCCAACCTTCACCGGGTGGTTCCACGCGTGGAATGCAAACCTGTGGGACACCGACGCTCTGGCCAAAATCCAGGCTCGCTTTTGAACCCAGTACTGCGTCCTTGTCTTTTCGTATACAAGCACTTCCTGTTCCTGTGCCATGAATTGCAGCTTTCTTTCAGATTGTTGAACTGCCCGTCTCACTTTAAGGTGCACTTTGTATTTTTGGGGGGCTTTACATTCTTGTTTGCCAAAAATGGTAGTGGGGATCGGATGTATCTAGTATGGATGTAACTTGCCATCATAGAAATGAAATCAAATAGCTTATTTAGTTCTCGTCAAACAaacagtttatattttaaaagagagaaaattaagttttttttttttaagttagtcTATTTAACTACAGTTTTATTGAGCATAAAGTCATATAAAATGGATTTTTAGTTGTGTACTTAAAGATCTGGCTGTgagaattgtcattttttaaaatgcactCATAATAGTAAATTAAAGTCGCCCTATGATGCCCTTG
>TCONS_00031942
GGAATGAATGCTCTCAGGATGAAAGTGGTGCGGCGGCCATCTTCTCCACACAGCTGGATGACTTTCTTGGTGGCAGCCCTGTTCAGTTCCGCGAGGTCCAAAACAACGAGTCGCTCACCTTCCTGGGTTACTTCAAGTCCGGCATCAAGTATATGCAAGGTGGAGTTGCGTCTGGCTTCCATCACGTGTCGACCAATGATGTGAATGTGAAACGTCTGCTGCACATTAAGGGCAGGAGGGTCATCAGAGCTACAGAGGTGGCGATGTCCTGGGCCAGCTTCAACAAAGGAGACTGCTTTATCGTCGACCTGGGGAAGGATATTTATCAGTGGTGTGGCAGTGGCTGCAACCGATTTGAGCGTCTGAAAGCCTCCAAGCTGGCTATTGATATCCGGGACAACGAGAGGAACGGCAGAGCCAAGCTGGTCATGGTGGAGGAGGACGCTGAACCAGACGCCCTGATTCAAGTCAGTCAAGTTTAAGCTCTACTTCTCCTTTAACAATTTCCACACAACCACCAGGATGAATGATTCCGTGGCTGAT

Function

symbol description
scinlb Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin nucleation and cell projection organization. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in several structures, including central nervous system; cornea; digestive system; hatching gland; and swim bladder. Orthologous to human SCIN (scinderin).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0030031 cell projection assembly biological_process
GO:0007417 central nervous system development biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2068 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin nucleation and cell projection organization. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in several structures, including central nervous system; cornea; digestive system; hatching gland; and swim bladder. Orthologous to human SCIN (scinderin).

Ensembl:

ensembl_id ENSDARG00000058348

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031941 False 2659 mRNA 0.49 17 10396579 10450784
TCONS_00031942 True 543 lncRNA 0.52 3 10428893 10432848

Neighbor

gene id symbol gene type direction distance location
XLOC_016190 wls coding downstream 9841 10342177 ~ 10386738 (-)
XLOC_016189 gng12a coding downstream 57766 10287133 ~ 10338813 (-)
XLOC_016188 dmbx1a coding downstream 204092 10183640 ~ 10192487 (-)
XLOC_016187 bcl6ab coding downstream 298388 10087334 ~ 10098191 (-)
XLOC_016186 fam78ba coding downstream 334004 10056100 ~ 10062575 (-)
XLOC_016192 ccdc18 coding upstream 17015 10467799 ~ 10564019 (-)
XLOC_016193 BX323564.1 coding upstream 147026 10597810 ~ 10600950 (-)
XLOC_016194 mtf2 coding upstream 152766 10603550 ~ 10641998 (-)
XLOC_016195 rpl5a coding upstream 236492 10687276 ~ 10703621 (-)
XLOC_016196 rpap2 coding upstream 340091 10790875 ~ 10821053 (-)
XLOC_016181 BX470264.1 non-coding downstream 533191 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 648363 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 708394 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 989904 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1555695 8835922 ~ 8840884 (-)
XLOC_016199 CR450845.2 non-coding upstream 454278 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 879940 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 886256 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1106191 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 1310042 11760826 ~ 11767204 (-)

Expression


Co-expression Network