XLOC_016195 (rpl5a)


Basic Information

Item Value
gene id XLOC_016195
gene name rpl5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10687276 ~ 10703621 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031951
TTTTCTCAGTGCAGCGGGAGCAGTATCGGAGTCTGAAGAGTTCAGTCTCCCAACCTAAAGGAGAACAAACGATCACAAAATGGGTTTCGTTAAGGTTGTTAAGAACAAGTCGTATTTCAGGAGGTACCAGGTGAAGTTCAGGAGAAGGAGAGAGGGGAAAACTGACTACTTTGCCCGTAAGCGTCTTGTCATCCAGGATAAGAACAAGTACAACACACCGAAGTACAGGATGATCATTCGGTTCTCCAACAGGGATATTGTTTGCCAGATCGCATATGCCAAAATTGAAGGCGACGCGATCGTCTGCGCTGCTTACTCTCACGAGTTGCCAAAATATGGCATTGCTTGTGGACTGACCAACTACGCTGCGGCCTACTGCACCGGTTTACTGTGTGCTCGCAGGCTGCTGAATAAGTTTGGTCTGGATAAGGTCTACGAAGGCCAGGTTGAGGTGACAGGCGATGAGTTTAACGTGGAAAGCATTGATGGCCAGCCAGGGGCTTTTTCTTGCTACCTGGATGCCGGTTTGACTAGAACCACCACAGGGAACAAAGTGTTTGGAGCTCTTAAAGGAGCAGTGGATGGAGGACTGTCCATTCCTCACAGcacaaagCGGTTCCCGGGCTATGACTCTGAAAGCAAAGAGTTCAATGCGGAGGTGCACAGGAAGCACATCTTGGGTCTGAATGTGTCCGAGTACATGAGCCTTCTGATGGAGGAGGACGAGGAACTGTACAAGAAACAGTTCTCCCGCTTCATCAAGAACGGCGTCACACCTGAATCTATTGAAGAGATGTACAAGAAGGCTCATGCTTCCATCCGTGAGAACCCTGTTCATGAGAGGAAGCCCAAGAGAGAAGTCAAGAAGAAGAGGTGGAACCGTGCCAAGCTCACTCTGGCCCAGAGAAAAGACCGTGTGGCCCAGAAAAAGGCCAGTTTCCTCAGGGCTCAGGAAGCTGCTGCAGACGACTAAAGAAATCAAACGTCAACGGCTCCAAAGAAAGTGTGCACCTTTTCCAAATAAATCATTTGGAAAGAA

Function

symbol description
rpl5a Predicted to enable 5S rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma. Orthologous to human RPL5 (ribosomal protein L5).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0008097 5S rRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5161 Predicted to enable 5S rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma. Orthologous to human RPL5 (ribosomal protein L5).

Ensembl:

ensembl_id ENSDARG00000020197

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031951 True 1039 mRNA 0.49 8 10687276 10703621

Neighbor

gene id symbol gene type direction distance location
XLOC_016194 mtf2 coding downstream 45278 10603550 ~ 10641998 (-)
XLOC_016193 BX323564.1 coding downstream 86326 10597810 ~ 10600950 (-)
XLOC_016192 ccdc18 coding downstream 123257 10467799 ~ 10564019 (-)
XLOC_016191 scinlb coding downstream 236492 10396579 ~ 10450784 (-)
XLOC_016190 wls coding downstream 300538 10342177 ~ 10386738 (-)
XLOC_016196 rpap2 coding upstream 87254 10790875 ~ 10821053 (-)
XLOC_016197 cdc7 coding upstream 160321 10863942 ~ 10877765 (-)
XLOC_016198 cdcp2 coding upstream 177547 10881168 ~ 10906854 (-)
XLOC_016199 CR450845.2 coding upstream 201441 10905062 ~ 10905179 (-)
XLOC_016200 ssbp3a coding upstream 230858 10934479 ~ 11027410 (-)
XLOC_016181 BX470264.1 non-coding downstream 823888 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 939060 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 999091 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 1280601 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1846392 8835922 ~ 8840884 (-)
XLOC_016204 BX901918.3 non-coding upstream 627103 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 633419 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 853354 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 1057205 11760826 ~ 11767204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G25575 r3hdm2 non-coding NC_047596.1 CM018542.1 11752487 ~ 11772290 (-)