XLOC_016196 (rpap2)


Basic Information

Item Value
gene id XLOC_016196
gene name rpap2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10790875 ~ 10821053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031952
GGAGTTTTGTTTTGATAAAACAAGCATGGATGCCGGTGAAGTGACAAGAAAGAGTCGGCCCTCAAAGTCCAAGAAGAAAGGTGGAAAGGGAACCCAAGCTATTTCAGCAGAGGATGAAGCGAAAAGGAGGGAAGCTGTTAAAGAACAACTCCGACAGAAGCTTGAGTTGGAGCGTAAAGCCCGGCAGGTGGTTGAGCGGCTGTTGGAGGACAGCGTGACAGAAGAGTTCCTCATGGACTGTGCCTGGCACATCACTCCTGCCAACTACAAAGACACTGTGGAAGAACGATCCATTGCTAAACTGTGTGGATATCCCATGTGCccaaataaattaactaatGTGCCCACTCAACAATATAAAATATCCACCAAGACAAATAAAGTCTATGATATTACAGAGCGTAAGTGCTTTTGCAGTAATTTCTGCTACAAAGCCTCCAAAAGTTTTGAGCTCCAGATATCAAAGATTCCACTTTGGCTTCGAAAGGAGGAGAGTCCACCTGAGATTAAGCTGATGAAACAAGGAGATGGAGGCAGCTCAGGACAGGAGATAAAGCTGATTGACAAGCCTATAACAGAAGCAGACATCGACAATCCCATCGAGGACATTCCCGAGTCTAACAAGGACTTGATCCAGGGTGAAAACGGTGACATCGAACAAGACTTTGTCTCCAGTGTGGTGTCCAATCAGCACAAACAAGTTCACTGGGGAAAACTGCCAAAGAGAGATGAAGTGAGTGAAGATGCTGCTGAATATTCACATTCAGAACATGAACAAAGAATCAATGGAGAAAATAAAGATGAAAGCGAATCTTCACAAACTCCTCAACCACAAAAAGACACAACCGATCATCCTGCACTGGAAAAAAACGCCTCTGAAATTGAAGGGACTTTGGAGCTTTTGAATCAGGATAAATCAACCCAACAGGAAGGTGAAAACACAAGCTCTTCACAGCCTGAATCTGACATCTCTGTTCCTGTGGCTGGCGACCTGAACATTACTCAGGTGGGAATGAGTAAAAGATCAGCTGCGGGCCTCAAAGGCCTGTTGAAGGATCATCATAAAGCTAAAACGGCTTCTACAGCCATCAGTCAGTGTCTTCTGGAGCGTCTACGGCAAGCCTTTATAGAGTGGAGAACTAAGGAAACCATGATATTTCTTTATGGTCCGGATTACGCCTCAGGGATGCAACTGTCTACAGCAGGAGCATGGGAAGAGGAGCAGTTGGATGAAGATGACCTGGATGAGGCTGAGGTGGGCGTGAGATCAGCTGAAGGAGGACCTTCCAGAACCAGCGCTCCAGTTCCTGATGTGGAGACTCTGAGAAAAGAGACAGAAATGTTGGAGCTGAGAGTGAGGGAGTTTTACAAAGGAGTGTGTGTTCTGCCGGAAGAGGTCGAGACGGCCGCTGTTAAAGAGACTGAACACACACAGGACAGTGGGAAAGATCCCCCTCTGCCTTTGGTTGATTCTCACGCGCAGCACCAGATTCAGAAACGCATTGTTGTGGAGAAGCTCAGCCACAGCTTGAGAGATATTGTTGGACCCCTTCGTCTAACAATGAGTGATGTCATCAATGATGTAAATAATTTGGTCCGGACATTCAGatttACGAACACAAACATTATTCACAAAAGCCCAGAGTGGACTTTAATTGCTGTGGTTCTTCTGTCAGTgtTAACAGAAGTGTCACCATTGTTGCGAGAGTCGTTGGCGAGCGTGTCTTCGTTAGAATACATCTCCTGTTTCATGAAAGAGCTGAAACTGGAGGACAAAGATCTTCACAACCTCGTGCTGCTCTTCAAACCGTGCGTCCCTATACAAACGTGATGTACAGAACACTCTTTTAGAGATGAAAATAAAAACCTGTCCCAACACAATGGTTCTGTGCTACATTTGAGTGTTAAGTCATTCTGCAACACAGCCTCAgtggaaatatgtgcttcagcctacatttcaTACATTTGACTGGAGTTTCTAGGTAAGATAAATGTTACAAGGCAATTTGATGCCGATAACTTTGTTCATTTTCACACTAATTTTATTTGCATCAATACATTATAGACAAATAGGGTTCATTAACGTTCAGGTCATCAAATATATTCCACAAACAACTTAACAGTGTCTTTAATTTGTAATGagtgttgtgttttgtgttgtgttgtacaTGGTTCCTCAACggtaaaaaaaatatgcaaaatcaaggtaaaatgATGCGATTGCAGTGCACTTTTCTCATACGTttgcctttgaaaacactattggtcgggtttagggaagcgttAAGGTCAGTCGTTATTAAGATGAACTGTACAACAAGTTCTGCCTTTTTCATAGACGTGTACAAGAAAGATgtgtatctgaaacatacaacaaaacatacccaagTCAGTAATCCCCATCCTTATTATGACAATTTTTCCGTCCTGTGGGGGTGCTGAGCAATCATCATTTCTCAGATTATGACAAGCTGATAAAACAATACTGCAACTCTCAAACAAGTTTTAAttttggagaaaattaaaaaggtctgcagtg

Function

symbol description
rpap2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPAP2 (RNA polymerase II associated protein 2).

GO:

id name namespace
GO:0009301 snRNA transcription biological_process
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0005634 nucleus cellular_component
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity molecular_function
GO:0043175 RNA polymerase core enzyme binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-050522-420 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPAP2 (RNA polymerase II associated protein 2).

Ensembl:

ensembl_id ENSDARG00000038397

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031952 True 2539 mRNA 0.43 12 10790875 10821053

Neighbor

gene id symbol gene type direction distance location
XLOC_016195 rpl5a coding downstream 87254 10687276 ~ 10703621 (-)
XLOC_016194 mtf2 coding downstream 148877 10603550 ~ 10641998 (-)
XLOC_016193 BX323564.1 coding downstream 189925 10597810 ~ 10600950 (-)
XLOC_016192 ccdc18 coding downstream 226856 10467799 ~ 10564019 (-)
XLOC_016191 scinlb coding downstream 340091 10396579 ~ 10450784 (-)
XLOC_016197 cdc7 coding upstream 42889 10863942 ~ 10877765 (-)
XLOC_016198 cdcp2 coding upstream 60115 10881168 ~ 10906854 (-)
XLOC_016199 CR450845.2 coding upstream 84009 10905062 ~ 10905179 (-)
XLOC_016200 ssbp3a coding upstream 113426 10934479 ~ 11027410 (-)
XLOC_016201 fam151a coding upstream 248002 11069055 ~ 11082914 (-)
XLOC_016181 BX470264.1 non-coding downstream 927487 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 1042659 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 1102690 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 1384200 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 1949991 8835922 ~ 8840884 (-)
XLOC_016204 BX901918.3 non-coding upstream 509671 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 515987 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 735922 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 939773 11760826 ~ 11767204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_03223283_03238063 RPAP2 coding CI01000004 null 3222913 ~ 3238081 (+)