XLOC_016197 (cdc7)


Basic Information

Item Value
gene id XLOC_016197
gene name cdc7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10863942 ~ 10877765 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031953
ATGTGACCTTCATCTCAGTTTTAGCGCGGAACTTGGAACCCGTCGGAAAGAAAGACATCGAAAACAAGATCGAAATGTGCCTATAAAAGAACATTAAAGCGTTTGTggggtattttaaaatatagtcGTGTTTGTTTAACTAATATTGGGTGAAGTTTTTAGTGTTCAATATCAAAATAAGATCGTGACTTAACTATTGAACTGTGCGCGGTAAGTTTAGTGTTTACGTCAGTTCAGCTGTTTATCCGCCGAGACAGTGTTTCTCATAAACAATAACAGACTTGGagaaaacataaacaataaaagTTTTCCCACGACAGATTATTAAATCTGTTCGTAATCGTCGGGTTTAATGGAAGAAGCAAATACTGTCCAGAGAAGCTCCCATCGCAGTGTTGAAAAGGGCAGAAGTCGACACAAAATTTCCAGAGATGTTGAGACGGAAATTGCATATCTGTATGAAGTTCTGCCACAGCTTTCTCGAATATTTCGCATCATAGATAAGATTGGAGAAgGTACTTTTAGTTCGGTATATTTGGCTGAGGCACAGATGACGGACAGTTCAAGGAGGTTGTTTGCATTGAAACATCTGATCCCTACCAGTCATCCTGTGCGCATCGCTGCTGAGCTCCAGTGCCTGACTGTTGCTGGAGGGACAGAAAATGTGATGGGAGTCACATACTGCTTCAGGAAGGAGCATCACGTGGTCATAGTCATGCCATACATGGAGCATCAGACCTTTGTGGATATTGTTGGCTTGTTAAGTTTTGAGGATGTGAGGCATTACATCTATCATCTGCTCAAAGCCTTGAAGCACATTCACAAGTTTGGCATCATCCACAGAGACATCAAACCAACCAATTTCCTGTTCAATCGACAGAAGAGGGAgTATGCGCTGGTGGATTTTGGCCTGGCTCAGGGCACTCCTGACACCCAGATCGAACTGCTGAAGGGATTGCTTTCAAAGCCCAAAAAGGAGGAAGTAATTCCACGCAAGATTGTTTCTGCCAAACATCGCTCCGTCCCTGTCAGAGCACCATTAAATCAGAAACAGAAACTTCCGGCTGAGAGTCAGAAACCTAAACCTGCTGCCGTCAACCCCCTACTCACCTGCAACTGCTACATGACTGACCGCGTCTGCAACATCTGCCTGTCCAGGAAACAGCAGGTGGCTCCGAGGGCTGGTACCCCTGGGTTTAGGGCTCCTGAGGTTCTAACCAAGTGTCCCAACCAGGGAACAGCGATTGACATGTGGTCAGCAGGGGTCATACTGTTGTCTCTACTAAGTGGCAGATATCCTTTCTTCAAAGCCAATGACGATCTGATCGCTCTTACTCAGATCATGACCATCCGAGGGTCTAAAGAGACTATAGAGGCTGCAAAGACCTTTGGTAAATCCATAGTGTGCAGCCGTGAGCTTCCTCGGCTGGACCTCAGGATTCTCTGCGAGACTCTGAGAGGTTTGCGATCGTGGGATGATGCCTCTCTTCCTGCTGAGTTTCAAGCCTCACATAATCCAGCAGAAGAAAAGGAGGAAGCGGAGAGTCCTGCACTGAAAAGCACAGGCTCCCGTTTGTGTAGAAGCAGTGCAGAGCTGAAGGAGATCGGCTGGGACAGAGTGCCGGATGAGGTGTACGATCTACTCGATAAACTGTTAGATTTAAACCCCGCTACCAGGATCACAGCCTCGACGGCACTGCAGCATCCACTCTTCAAAGATATGAGTGAGTAGTGATTGTGCGCATCCACGATTTTGAGTTATTCTGTAAAGTGTTTTTTGAATGTGTTTATTTGCTAACAACATGTTGTACagtgatgtatttatttttatattttggagaGTTTCATTTTGATAATAAAGTTTGAATTGTCCGTTGTTCAACTTTAGAGGGTTTCCTAATTGGATGGTTTACTCAAATATTCAGTGTTCAAGTATTTTGtagataaaataaattgtgaataTTTTGGAAA
>TCONS_00031955
ATGGAAGAAGCAAATACTGTCCAGAGAAGCTCCCATCGCAGTGTTGAAAAGGGCAGAAGTCGACACAAAATTTCCAGAGATGTTGAGACGGAAATTGCATATCTGTATGAAGTTCTGCCACAGCTTTCTCGAATATTTCGCATCATAGATAAGATTGGAGAAgGTACTTTTAGTTCGGTATATTTGGCTGAGGCACAGATGACGGACAGTTCAAGGAGGTTGTTTGCATTGAAACATCTGATCCCTACCAGTCATCCTGTGCGCATCGCTGCTGAGCTCCAGTGCCTGACTGTTGCTGGAGGGACAGAAAATGTGATGGGAGTCACATACTGCTTCAGGAAGGAGCATCACGTGGTCATAGTCATGCCATACATGGAGCATCAGACCTTTGTGGATATTGTTGGCTTGTTAAGTTTTGAGGATGTGAGGCATTACATCTATCATCTGCTCAAAGCCTTGAAGCACATTCACAAGTTTGGCATCATCCACAGAGACATCAAACCAACCAATTTCCTGTTCAATCGACAGAAGAGGGAgTATGCGCTGGTGGATTTTGGCCTGGCTCAGGGCACTCCTGACACCCAGATCGAACTGCTGAAGGAACTGATGGGACTTGATAAAGCACCACGGTCTGTATTTGGGGAGAAAAGCATAAACAGCACAAACTCTCATAAACCAGGCTCTGACAAAGTTGAGGGATTGCTTTCAAAGCCCAAAAAGGAGGAAGTAATTCCACGCAAGATTGTTTCTGCCAAACATCGCTCCGTCCCTGTCAGAGCACCATTAAATCAGAAACAGAAACTTCCGGCTGAGAGTCAGAAACCTAAACCTGCTGCCGTCAACCCCCTACTCACCTGCAACTGCTACATGACTGACCGCGTCTGCAACATCTGCCTGTCCAGGAAACAGCAGGTGGCTCCGAGGGCTGGTACCCCTGGGTTTAGGGCTCCTGAGGTTCTAACCAAGTGTCCCAACCAGGGAACAGCGATTGACATGTGGTCAGCAGGGGTCATACTGTTGTCTCTACTAAGTGGCAGATATCCTTTCTTCAAAGCCAATGACGATCTGATCGCTCTTACTCAGATCATGACCATCCGAGGGTCTAAAGAGACTATAGAGGCTGCAAAGACCTTTGGTAAATCCATAGTGTGCAGCCGTGAGCTTCCTCGGCTGGACCTCAGGATTCTCTGCGAGACTCTGAGAGGTTTGCGATCGTGGGATGATGCCTCTCTTCCTGCTGAGTTTCAAGCCTCACATAATCCAGCAGAAGAAAAGGAGGAAGCGGAGAGTCCTGCACTGAAAAGCACAGGCTCCCGTTTGTGTAGAAGCAGTGCAGAGCTGAAGGAGATCGGCTGGGACAGAGTGCCGGATGAGGTGTACGATCTACTCGATAAACTGTTAGATTTAAACCCCGCTACCAGGATCACAGCCTCGACGGCACTGCAGCATCCACTCTTCAAAGATATGAGTGAGTAG
>TCONS_00031954
ATGGAAGAAGCAAATACTGTCCAGAGAAGCTCCCATCGCAGTGTTGAAAAGGGCAGAAGTCGACACAAAATTTCCAGAGATGTTGAGACGGAAATTGCATATCTGTATGAAGTTCTGCCACAGCTTTCTCGAATATTTCGCATCATAGATAAGATTGGAGAAgGTACTTTTAGTTCGGTATATTTGGCTGAGGCACAGATGACGGACAGTTCAAGGAGGTTGTTTGCATTGAAACATCTGATCCCTACCAGTCATCCTGTGCGCATCGCTGCTGAGCTCCAGTGCCTGACTGTTGCTGGAGGGACAGAAAATGTGATGGGAGTCACATACTGCTTCAGGAAGGAGCATCACGTGGTCATAGTCATGCCATACATGGAGCATCAGACCTTTGTGGATATTGTTGGCTTGTTAAGTTTTGAGGATGTGAGGCATTACATCTATCATCTGCTCAAAGCCTTGAAGCACATTCACAAGTTTGGCATCATCCACAGAGACATCAAACCAACCAATTTCCTGTTCAATCGACAGAAGAGGGAgTATGCGCTGGTGGATTTTGGCCTGGCTCAGGGCACTCCTGACACCCAGATCGAACTGCTGAAGGTGGTCAAATCAAAAGGTCATAAAGGTGGTGGGTCATCTAAGATGGTGGAGGAATCACTGGGAAAACAGAAACTGGTGCCTTTACCACCCAACAGCAGAAACCCTGCTGTCCAGTCCAGCACTAAAGCACCGGCTAAAAGACCCTGCCCACCCTCACGCGTTAAACACAGCAAGGAACTGATGGGACTTGATAAAGCACCACGGTCTGTATTTGGGGAGAAAAGCATAAACAGCACAAACTCTCATAAACCAGGCTCTGACAAAGTTGAGGGATTGCTTTCAAAGCCCAAAAAGGAGGAAGTAATTCCACGCAAGATTGTTTCTGCCAAACATCGCTCCGTCCCTGTCAGAGCACCATTAAATCAGAAACAGAAACTTCCGGCTGAGAGTCAGAAACCTAAACCTGCTGCCGTCAACCCCCTACTCACCTGCAACTGCTACATGACTGACCGCGTCTGCAACATCTGCCTGTCCAGGAAACAGCAGGTGGCTCCGAGGGCTGGTACCCCTGGGTTTAGGGCTCCTGAGGTTCTAACCAAGTGTCCCAACCAGGGAACAGCGATTGACATGTGGTCAGCAGGGGTCATACTGTTGTCTCTACTAAGTGGCAGATATCCTTTCTTCAAAGCCAATGACGATCTGATCGCTCTTACTCAGATCATGACCATCCGAGGGTCTAAAGAGACTATAGAGGCTGCAAAGACCTTTGGTAAATCCATAGTGTGCAGCCGTGAGCTTCCTCGGCTGGACCTCAGGATTCTCTGCGAGACTCTGAGAGGTTTGCGATCGTGGGATGATGCCTCTCTTCCTGCTGAGTTTCAAGCCTCACATAATCCAGCAGAAGAAAAGGAGGAAGCGGAGAGTCCTGCACTGAAAAGCACAGGCTCCCGTTTGTGTAGAAGCAGTGCAGAGCTGAAGGAGATCGGCTGGGACAGAGTGCCGGATGAGGTGTACGATCTACTCGATAAACTGTTAGATTTAAACCCCGCTACCAGGATCACAGCCTCGACGGCACTGCAGCATCCACTCTTCAAAGATATGAGTGAGTAG

Function

symbol description
cdc7 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in double-strand break repair via break-induced replication and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDC7 (cell division cycle 7).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko01001 Protein kinases
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-041114-113 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in double-strand break repair via break-induced replication and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDC7 (cell division cycle 7).

Ensembl:

ensembl_id ENSDARG00000023584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031953 False 1971 mRNA 0.44 11 10863942 10877765
TCONS_00031955 False 1476 mRNA 0.49 11 10864181 10877228
TCONS_00031954 True 1650 mRNA 0.49 11 10864181 10877228

Neighbor

gene id symbol gene type direction distance location
XLOC_016196 rpap2 coding downstream 42889 10790875 ~ 10821053 (-)
XLOC_016195 rpl5a coding downstream 160321 10687276 ~ 10703621 (-)
XLOC_016194 mtf2 coding downstream 221944 10603550 ~ 10641998 (-)
XLOC_016193 BX323564.1 coding downstream 262992 10597810 ~ 10600950 (-)
XLOC_016192 ccdc18 coding downstream 299923 10467799 ~ 10564019 (-)
XLOC_016198 cdcp2 coding upstream 3403 10881168 ~ 10906854 (-)
XLOC_016199 CR450845.2 coding upstream 27297 10905062 ~ 10905179 (-)
XLOC_016200 ssbp3a coding upstream 56714 10934479 ~ 11027410 (-)
XLOC_016201 fam151a coding upstream 191290 11069055 ~ 11082914 (-)
XLOC_016202 lrrc53 coding upstream 205546 11083311 ~ 11120220 (-)
XLOC_016181 BX470264.1 non-coding downstream 1000554 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 1115726 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 1175757 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 1457267 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 2023058 8835922 ~ 8840884 (-)
XLOC_016204 BX901918.3 non-coding upstream 452959 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 459275 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 679210 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 883061 11760826 ~ 11767204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_03206527_03212826 CDC7 coding CI01000004 null 3206527 ~ 3212954 (+)