XLOC_016203 (slc44a5a)


Basic Information

Item Value
gene id XLOC_016203
gene name slc44a5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11216814 ~ 11468654 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031972
GCTCCGCACGTTTGATGACGCTCCGCTGTAAACATCACTGACGCGCGAGTCGCGTGAGGGAATCTATTAAACTTGGAATTTGGCGAGCGACACTGTTCTTCAAACCAACCTGCGCCTGCAAACCCTACAAAACCCACGCTGAGATGGCAAGAAAATCCCAAGTCCCGTCTGCGTATTATGGTGAACCTCGCAAGTTTGACCCAACATTTAGAGGACCTGTGTATAACAGAGGCTGTACGGATGTGCTGTGCTGTGTGCTCTTCGTCATTGTCATCCTTGGCTACATTGCACTGGGCACTGTTGCGTGGATCCACGGCGACCCAAGGAAAGTCATTTACCCCACAGACAGCACGGGTCAGTTCTGTGGCCAGAAGGGAACACCCAATGCAAAGAAAGCCATATTATTCTACTTCAACATACTGAAATGTGCCAGTCCTGCTGTCCTGATAAACCTCCAGTGCCCTACTACTCAGATGTGTGTCTCCAAGTGCCCGGATCGATTTGCAACGTACACAGATATGCAGCTACTTTATAGATTCAACAAGAGCCACTGGGATTACTATAAACAGTTCTGCAAGCCAGGCTTCAATAACCCCCAAAAGTCAGTGGCACAAGTGCTGCGAGATGAGGACTGTCCGTCAATGATAGTGCCAAGCCGACCATTTTTACAGCGCTGCTTCCCAGACTTCATCACCAGAAATGGCACCCTAACTGTCGCTAACAAAACCGCTTTCAAAGACGCACTGGACACGGCCAGAAGTGTGACTGAACTTAGAGATGCAGCCAATGGTATTACAAGTATACACGAGGCCAAAGAAGTGGGAATGAAAATTGTGGAGGATTACGCCAGCTGCTGGTACTGGATAGTGATAGGGCTGTTCATAGCGCTGGTCATCAGTCTGATCTTCATCCTGTTGCTGCGATTCACTGCAGGCTTCCTCCTCTGGTTCATCATCTTCGCTGTCATCCTGCTTGTGGCCTACGGAATCTGGCACTGTTACTGGGAGTTCGCTGTTCTCAGGGAGACTCCTGGAGCAGACGTCACCATCTCTGACATCGGCTTCCAGACGGACCTCCACGTCTACCTACAACTCAGTCAGACCTGGCTAGTCTTCATGGTGACTCTGGGTTTGACTGAAGCCTCCATAGTTTTGATGCTCATATTCCTGAGAAAGCGGGTTCGCATTGCTATCGCTCTGCTCCGAGAGGGTAGCAGGGCCATCAGTTACATCATGTCTGCTCTGTTCTATCCCATCATTACCTTTGTGCTGCTTGCCATCTGTATCTCCTACTGGGCCATGACTGCACTatttcttgcatcttctggtGATGCTGTTTACAAAGTTGCATCAGGTAATCCCAACTGCAAGTACGCCAACCAAACCTGCAGTCCTGAGAGCTTCAACAGGACCAACATCACCAAGCAGTGTCCCGGTGCTCAGTGTCTTTTTGCCTTTTACGGAGGGGAGAGCTTGTACCATCGATATATCTTCATCCTCCAGCTCTGTAATCTGCTGGTCTTCCTCTGGCTGGTTAATTTCACCATTGCTCTAGGACAGTGCACCGTGGCAGGGGCTTTCGCCTCATATTACTGGGCTCGGAGAAAGCCTGCAGACATCCCACCCTGCCCTGTGTTCTCCTCTTTTTCCAGGGCTTTACGgtaCCACACAGGGTCTCTTGCTTTTGGATCTCTGATCTTAGCGGTGGTTCAACTCATCCGTGTCATTCTGGAATATCTGGACCACAAACTTAAAGGAGCTCACAATGCATTTGCACGGTTCCTGCTCTGCTGTCTTAAGTGCTGCTTCTGGTGTCTGGAGCGATTTATACGCTTTATGAACAGGAACGCGTATATAATGATTGCTATTTATGGAAAGAACTTCTGCACGTCAGCGCGGGAGGCGTTCTATTTACTGATGAGGAATGTAGTGAGGGTGGCAGTGTTGGACAAAGTCACAGATTTCTTACTCTTTCTGGGGAAACTATTGATAGCAGGGAGTGTTGGTGTTATTGCCTTCTTCCTCTTTACACGCAAGATACCCATCATCCAGGAAGAGGTTCCAGTGTTGAATTACTACTGCGTGCCTCTCTTGACAGTAATACTGGGTTCATACTTGATTGCGCACAGCTTCTTCAGTGTCTATGCAATGTGTGTGGACACCTTGTTCCTCTGCTTCTGCGAAGACTTAGAAAGAAATGACGGGACGACAGCCAAGCCTTTCTTCATGTCTCCTGGCCTGAAAAGAATTCTGGGAAAGGCTGAGCAAAGCCCCAAAAAGTCACgtggataaaaaaacaaatagattGTTCATGGAATCTATGAGCAAAACTTTTATTGGACTTACAAACATAGCATGCATTAACTACAGTATATTAGAGCTGGACGTTTTTATAATGAAAGCTGAGGATTTTTGGAAGTGGTGATGTGACTatcc
>TCONS_00031974
AAAGAAAGCCATATTATTCTACTTCAACATACTGAAATGTGCCAGTCCTGCTGTCCTGATAAACCTCCAGTGCCCTACTACTCAGGTAACACGCTTGTTCATTACAAATCCTGGCATTGTTTAGTTCATTTCGCTCTGGGCTTTTGCATAACTAACGCTTTTGTTTTCTAGATGTGTGTCTCCAAGTGCCCGGATCGATTTGCAACGTACACAGATATGCAGCTACTTTATAGATTCAACAAGAGCCACTGGGATTACTATAAACAGTTCTGCAAGCCAGGCTTCAATAACCCCCAAAAGTCAGTGGCACAAGTGCTGCGAGATGAGGACTGTCCGTCAATGATAGTGCCAAGCCGACCATTTTTACAGCGCTGCTTCCCAGACTTCATCACCAGAAATGGCACCCTAACTGTCGCTAACAAAACCGCTTTCAAAGACGCACTGGACACGGCCAGAAGTGTGACTGAACTTAGAGATGCAGCCAATGGTATTACAAGTATACACGAGGCCAAAGAAGTGGGAATGAAAATTGTGGAGGATTACGCCAGCTGCTGGTACTGGATAGTGATAGGGCTGTTCATAGCGCTGGTCATCAGTCTGATCTTCATCCTGTTGCTGCGATTCACTGCAGGCTTCCTCCTCTGGTTCATCATCTTCGCTGTCATCCTGCTTGTGGCCTACGGAATCTGGCACTGTTACTGGGAGTTCGCTGTTCTCAGGGAGACTCCTGGAGCAGACGTCACCATCTCTGACATCGGCTTCCAGACGGACCTCCACGTCTACCTACAACTCAGTCAGACCTGGCTAGTCTTCATGGTGACTCTGGGTTTGACTGAAGCCTCCATAGTTTTGATGCTCATATTCCTGAGAAAGCGGGTTCGCATTGCTATCGCTCTGCTCCGAGAGGGTAGCAGGGCCATCAGTTACATCATGTCTGCTCTGTTCTATCCCATCATTACCTTTGTGCTGCTTGCCATCTGTATCTCCTACTGGGCCATGACTGCACTatttcttgcatcttctggtGATGCTGTTTACAAAGTTGCATCAGGTAATCCCAACTGCAAGTACGCCAACCAAACCTGCAGTCCTGAGAGCTTCAACAGGACCAACATCACCAAGCAGTGTCCCGGTGCTCAGTGTCTTTTTGCCTTTTACGGAGGGGAGAGCTTGTACCATCGATATATCTTCATCCTCCAGCTCTGTAATCTGCTGGTCTTCCTCTGGCTGGTTAATTTCACCATTGCTCTAGGACAGTGCACCGTGGCAGGGGCTTTCGCCTCATATTACTGGGCTCGGAGAAAGCCTGCAGACATCCCACCCTGCCCTGTGTTCTCCTCTTTTTCCAGGGCTTTACGgtaCCACACAGGGTCTCTTGCTTTTGGATCTCTGATCTTAGCGGTGGTTCAACTCATCCGTGTCATTCTGGAATATCTGGACCACAAACTTAAAGGAGCTCACAATGCATTTGCACGGTTCCTGCTCTGCTGTCTTAAGTGCTGCTTCTGGTGTCTGGAGCGATTTATACGCTTTATGAACAGGAACGCGTATATAATGATTGCTATTTATGGAAAGAACTTCTGCACGTCAGCGCGGGAGGCGTTCTATTTACTGATGAGGAATGTAGTGAGGGTGGCAGTGTTGGACAAAGTCACAGATTTCTTACTCTTTCTGGGGAAACTATTGATAGCAGGGAGTGTTGGTGTTATTGCCTTCTTCCTCTTTACACGCAAGATACCCATCATCCAGGAAGAGGTTCCAGTGTTGAATTACTACTGCGTGCCTCTCTTGACAGTAATACTGGGTTCATACTTGATTGCGCACAGCTTCTTCAGTGTCTATGCAATGTGTGTGGACACCTTGTTCCTCTGCTTCTGCGAAGACTTAGAAAGAAATGACGGGACGACAGCCAAGCCTTTCTTCATGTCTCCTGGCCTGAAAAGAATTCTGGGAAAGGCTGAGCAAAGCCCCAAAAAGTCACgtggataa
>TCONS_00031973
AAAGAAAGCCATATTATTCTACTTCAACATACTGAAATGTGCCAGTCCTGCTGTCCTGATAAACCTCCAGTGCCCTACTACTCAGATGTGTGTCTCCAAGTGCCCGGATCGATTTGCAACGTACACAGATATGCAGCTACTTTATAGATTCAACAAGAGCCACTGGGATTACTATAAACAGTTCTGCAAGCCAGGCTTCAATAACCCCCAAAAGTCAGTGGCACAAGTGCTGCGAGATGAGGACTGTCCGTCAATGATAGTGCCAAGCCGACCATTTTTACAGCGCTGCTTCCCAGACTTCATCACCAGAAATGGCACCCTAACTGTCGCTAACAAAACCGCTTTCAAAGACGCACTGGACACGGCCAGAAGTGTGACTGAACTTAGAGATGCAGCCAATGGTATTACAAGTATACACGAGGCCAAAGAAGTGGGAATGAAAATTGTGGAGGATTACGCCAGCTGCTGGTACTGGATAGTGATAGGGCTGTTCATAGCGCTGGTCATCAGTCTGATCTTCATCCTGTTGCTGCGATTCACTGCAGGCTTCCTCCTCTGGTTCATCATCTTCGCTGTCATCCTGCTTGTGGCCTACGGAATCTGGCACTGTTACTGGGAGTTCGCTGTTCTCAGGGAGACTCCTGGAGCAGACGTCACCATCTCTGACATCGGCTTCCAGACGGACCTCCACGTCTACCTACAACTCAGTCAGACCTGGCTAGTCTTCATGGTGACTCTGGGTTTGACTGAAGCCTCCATAGTTTTGATGCTCATATTCCTGAGAAAGCGGGTTCGCATTGCTATCGCTCTGCTCCGAGAGGGTAGCAGGGCCATCAGTTACATCATGTCTGCTCTGTTCTATCCCATCATTACCTTTGTGCTGCTTGCCATCTGTATCTCCTACTGGGCCATGACTGCACTatttcttgcatcttctggtGATGCTGTTTACAAAGTTGCATCAGGTAATCCCAACTGCAAGTACGCCAACCAAACCTGCAGTCCTGAGAGCTTCAACAGGACCAACATCACCAAGCAGTGTCCCGGTGCTCAGTGTCTTTTTGCCTTTTACGGAGGGGAGAGCTTGTACCATCGATATATCTTCATCCTCCAGCTCTGTAATCTGCTGGTCTTCCTCTGGCTGGTTAATTTCACCATTGCTCTAGGACAGTGCACCGTGGCAGGGGCTTTCGCCTCATATTACTGGGCTCGGAGAAAGCCTGCAGACATCCCACCCTGCCCTGTGTTCTCCTCTTTTTCCAGGGCTTTACGgtaCCACACAGGGTCTCTTGCTTTTGGATCTCTGATCTTAGCGGTGGTTCAACTCATCCGTGTCATTCTGGAATATCTGGACCACAAACTTAAAGGAGCTCACAATGCATTTGCACGGTTCCTGCTCTGCTGTCTTAAGTGCTGCTTCTGGTGTCTGGAGCGATTTATACGCTTTATGAACAGGAACGCGTATATAATGATTGCTATTTATGGAAAGAACTTCTGCACGTCAGCGCGGGAGGCGTTCTATTTACTGATGAGGAATGTAGTGAGGGTGGCAGTGTTGGACAAAGTCACAGATTTCTTACTCTTTCTGGGGAAACTATTGATAGCAGGGAGTGTTGGTGTTATTGCCTTCTTCCTCTTTACACGCAAGATACCCATCATCCAGGAAGAGGTTCCAGTGTTGAATTACTACTGCGTGCCTCTCTTGACAGTAATACTGGGTTCATACTTGATTGCGCACAGCTTCTTCAGTGTCTATGCAATGTGTGTGGACACCTTGTTCCTCTGCTTCTGCGAAGACTTAGAAAGAAATGACGGGACGACAGCCAAGCCTTTCTTCATGTCTCCTGGCCTGAAAAGAATTCTGGGAAAGGCTGAGCAAAGCCCCAAAAAGTCACgtggataa
>TCONS_00031975
AGATGTGTGTCTCCAAGTGCCCGGATCGATTTGCAACGTACACAGATATGCAGCTACTTTATAGATTCAACAAGAGCCACTGGGATTACTATAAACAGTTCTGCAAGCCAGGCTTCAATAACCCCCAAAAGTCAGTGGCACAAGTGCTGCGAGATGAGGACTGTCCGTCAATGATAGTGCCAAGCCGACCATGTAAgtgatttgtgtgtgtatgtgcgcgcgtgtgtgtgtgtgtcctataTAAACCCTTTCACTTACTTTTTAGGAACTGAAAGCATTTAATCTAAAACTCTTTCAGTTAGTGTGCACTTGTTACACTTTTAGTGTACTTCTAA

Function

symbol description
slc44a5a Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-333 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).

Ensembl:

ensembl_id ENSDARG00000017398

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031972 False 2435 mRNA 0.48 22 11216814 11468654
TCONS_00031974 False 1989 mRNA 0.48 17 11216958 11258547
TCONS_00031973 False 1903 mRNA 0.48 18 11216958 11258547
TCONS_00031975 True 335 lncRNA 0.43 2 11251097 11258378

Neighbor

gene id symbol gene type direction distance location
XLOC_016202 lrrc53 coding downstream 96594 11083311 ~ 11120220 (-)
XLOC_016201 fam151a coding downstream 133900 11069055 ~ 11082914 (-)
XLOC_016200 ssbp3a coding downstream 189404 10934479 ~ 11027410 (-)
XLOC_016198 cdcp2 coding downstream 309960 10881168 ~ 10906854 (-)
XLOC_016199 CR450845.2 coding downstream 311635 10905062 ~ 10905179 (-)
XLOC_016206 sdr16c5a coding upstream 14418 11483072 ~ 11504778 (-)
XLOC_016207 penka coding upstream 40037 11508691 ~ 11512819 (-)
XLOC_016208 NA coding upstream 88321 11556975 ~ 11558124 (-)
XLOC_016209 impad1 coding upstream 164599 11633253 ~ 11648731 (-)
XLOC_016210 MFF coding upstream 182522 11651176 ~ 11662923 (-)
XLOC_016181 BX470264.1 non-coding downstream 1353426 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 1468598 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 1528629 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 1810139 9406558 ~ 9406675 (-)
XLOC_016211 CT573467.1 non-coding upstream 292172 11760826 ~ 11767204 (-)
XLOC_016213 CT573433.1 non-coding upstream 507607 11976261 ~ 11981305 (-)
XLOC_016216 CR376724.1 non-coding upstream 755769 12224423 ~ 12224539 (-)
XLOC_016218 NA non-coding upstream 1235303 12703957 ~ 12704384 (-)

Expression


Co-expression Network