XLOC_016204 (BX901918.3)


Basic Information

Item Value
gene id XLOC_016204
gene name BX901918.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11330724 ~ 11331316 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031976
GTTATTAGCGGTGTAACTTCCCATACTCAGATGCCGGGCCAGATCACAATGCGCTCCTTTTCTtccgacatgttgtgcgttcatgCACTAAATACCACAACATACTTGGAAAGTTTGATGGCACTGACtgcttaataattgttattaaagaAGTTTGAAGAGGATTACTTCTTTGTTGCCTGATTCTCTGACCGGAATCAATGTCCATATTTGTCCGCCAGTAGAACTGTAAATTTACTCCGTTGACAGAGGTATAGTACCCCGTCACA

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095190

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031976 True 269 lncRNA 0.42 2 11330724 11331316

Neighbor

gene id symbol gene type direction distance location
XLOC_016202 lrrc53 coding downstream 210504 11083311 ~ 11120220 (-)
XLOC_016201 fam151a coding downstream 247810 11069055 ~ 11082914 (-)
XLOC_016200 ssbp3a coding downstream 303314 10934479 ~ 11027410 (-)
XLOC_016198 cdcp2 coding downstream 423870 10881168 ~ 10906854 (-)
XLOC_016205 BX901918.2 coding upstream 5724 11337040 ~ 11337983 (-)
XLOC_016206 sdr16c5a coding upstream 151756 11483072 ~ 11504778 (-)
XLOC_016207 penka coding upstream 177375 11508691 ~ 11512819 (-)
XLOC_016208 NA coding upstream 225659 11556975 ~ 11558124 (-)
XLOC_016209 impad1 coding upstream 301937 11633253 ~ 11648731 (-)
XLOC_016199 CR450845.2 non-coding downstream 425545 10905062 ~ 10905179 (-)
XLOC_016181 BX470264.1 non-coding downstream 1467336 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 1582508 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 1642539 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 1924049 9406558 ~ 9406675 (-)
XLOC_016211 CT573467.1 non-coding upstream 429510 11760826 ~ 11767204 (-)
XLOC_016213 CT573433.1 non-coding upstream 644945 11976261 ~ 11981305 (-)
XLOC_016216 CR376724.1 non-coding upstream 893107 12224423 ~ 12224539 (-)

Expression


Co-expression Network