XLOC_016207 (penka)


Basic Information

Item Value
gene id XLOC_016207
gene name penka
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11508691 ~ 11512819 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031980
GGAACAGAGCAGGTGTGGAGTTTATCCTCGAGCTGGAAGACAGCAGATACGAGACGAAAAACGCCGCAGCATCCGTGATAAGCGGCTGGCTATAGTGAGCTTTCTGTAAATCATCTCCTTTTTGCTccttttgagaaaatattcagagAACATATTTAGAACTACAGTGGACATTGCCAGAGAAATCTGCTGTTAACAGCTCATGGCGTTAATGATGAACTCCTGGTGGACTGTGGCTTTGAGCGCCTGTCTCGTGCTCATGGTTCGGGCTGAATGCGGCAGAGACTGCGCGCTCTGCGTTTACCGGCTCCTCCGACAGACAGACATCGACACACTGGCCTGCACATTAGAATGTGAAGGGTCTGTGGACTCCAGAAAAATCGAAATCTGTAAAAACATCCTCACCGAAGAGGATCGCCTTGCCATCGACAGCCTCAAGCAAGATGAAGAGAGTGCAAACCATGTTCTCGCCAAGAAATATGGTGGCTTCATGAAGCGTTACGGCGGCTTTATGATTAAAAAAGCAGCAGAAATCGGTACAGGAGCCCCAGCTGAGAGTGACGGCACAGGGGCCATCAGTAAGAAATATGGAGGCTTTATGAAGAAGGCAGACGATGGAGCTGAAGACCAACAGGTGGAGCTCCTGCGAGAGATCCTCCGAGTTGGACTCTCTTCAGAGTCAGATGATCAGCCTGATGGGGACATGGTCAAACGCTATGGGGGCTTCATGAGGAGTGTACAGGAGAACACTGGGAGAGACCTGCACAAGAGATATGGTGGCTTTATGCGAAGAGTGGGCAGGCCTGATTGGTTGGACAACCAGAAAAGCGGTGGGCTTCTGAAACGCACTTGGGAGGAAGGAGGCGAGACGGCGCTGCCCGACATGCAGAAGAGATACGGAGGATTCATGGATTAGAGCAAAAAACATGGACACCCATCTTAAAACAACCCTCTTCCTACTTTGTGTAGAGCTTGCACTGTACCAATTTCATGTGAAGCCATTTTGaatttctatttatttcatttgtttttgtctttgctGCTAAATATTCCTTTATAATGTACAGTGTATGTTTGTTCTAGGgtttgtgttttgaaaaaaaaaaaatttatctttGCATTCTCTTACCATGGAATCACAAATCAGACATTTGGTAAAGACAGAGGACAATAATCGAACCATTTCTGGGTCACGTCCCCACAAATGAAAAGCACTTTTGGCGGTGTTGCTTTGTTCTCATCTCATCACATTATTAGTCCGCTTCGCTCATTGAACATTGTTGGTGAGGTTAAGTCTGCTGTCTGCACTTGATGTCTTAATGATTAATGCATTTCCTTTACAAAACCTTATAcagtttttgttcctgtttaaaTCGAGGCAACATTTTGAGCTATTAGCTGTACAGAATACAATAAATTCATCTTACTGCAGAAGA

Function

symbol description
penka Predicted to enable opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in central nervous system; neural tube; neurons; and retina. Orthologous to human PENK (proenkephalin).

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007600 sensory perception biological_process
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043679 axon terminus cellular_component
GO:0031628 opioid receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030729-31 Predicted to enable opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in central nervous system; neural tube; neurons; and retina. Orthologous to human PENK (proenkephalin).

Ensembl:

ensembl_id ENSDARG00000004869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031980 True 1436 mRNA 0.45 3 11508691 11512819

Neighbor

gene id symbol gene type direction distance location
XLOC_016206 sdr16c5a coding downstream 3913 11483072 ~ 11504778 (-)
XLOC_016203 slc44a5a coding downstream 40037 11216814 ~ 11468654 (-)
XLOC_016205 BX901918.2 coding downstream 170708 11337040 ~ 11337983 (-)
XLOC_016204 BX901918.3 coding downstream 177375 11330724 ~ 11331316 (-)
XLOC_016202 lrrc53 coding downstream 388471 11083311 ~ 11120220 (-)
XLOC_016208 NA coding upstream 44156 11556975 ~ 11558124 (-)
XLOC_016209 impad1 coding upstream 120434 11633253 ~ 11648731 (-)
XLOC_016210 MFF coding upstream 138357 11651176 ~ 11662923 (-)
XLOC_016211 CT573467.1 coding upstream 248007 11760826 ~ 11767204 (-)
XLOC_016212 abhd3 coding upstream 335691 11848510 ~ 11912347 (-)
XLOC_016199 CR450845.2 non-coding downstream 603512 10905062 ~ 10905179 (-)
XLOC_016181 BX470264.1 non-coding downstream 1645303 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 1760475 9746437 ~ 9748216 (-)
XLOC_016213 CT573433.1 non-coding upstream 463442 11976261 ~ 11981305 (-)
XLOC_016216 CR376724.1 non-coding upstream 711604 12224423 ~ 12224539 (-)
XLOC_016218 NA non-coding upstream 1191138 12703957 ~ 12704384 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_02948465_02951235 PENKA coding CI01000004 null 2947216 ~ 2951743 (+)