XLOC_016214 (kcnt2)


Basic Information

Item Value
gene id XLOC_016214
gene name kcnt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12019341 ~ 12079718 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031987
TGTCAAAGAAAGTAGTTTCAAAGAACGTCTCCAGTGGTACTTGATCAAAAACCAACGATCAAGTCTCAGTGTGAGAGTGTTTTATCTGTCACTCAAGGTGTTGAGCTGTATTTTGTATGTATCCAGAGTGCTGACTGACTGTAAACATCAGACACAATGCTCAAGCCATCACGGTAACTATACCCTGCTTGAAATCGACTGGGCTCCGGTTATTTGGGTTGATCGAAATGAAATACTTTGGGCTGTACAGGTGTCTGTTGctgtcatttgtttattcatgagAATCCTACTGACATATCTACGATACAGGGGTAACATATTGCAGCAGGTACTTCAAATGGCGTTTATCTTGGAATTGATTGACACCGTGCCTTTTGTAATTGGAATTTTTTATCAATCCTTCCGGAAGCTCTTCGTTCCTGTTTTTCTGAACTGCTGGCTGGCAAAACGTGCTTTGGAAAGCACGGTTAATGATCTTCATCGAGCTATTCACCGGACACAGTCAGCCATGTTCAATCAGGTCCTCATGCTCATCTCCACCATTGTCTGCCTCATTTTCACTTTCATTTGTGGTGTTGAGCACTTGCAGCGAGCCGGAACAAAACTCACAGTTTTTGACTCTTTCTACTTCTGCATCGTGACCTTTTCTACAGTGGGGTTTGGAGATGTTGTTCCTGATATTTGGCCATCCAAGTTGCTGGTGGTTTTTATGATACTTGTCACTTTAATGGTCCTGCCAATCCAGTTTGAGGAGTTGGCTTATCTGTGGATGGAGCGGCAGAAGTCTGGAGGATATTACAGCAGACAGAGAGCAGAAACAGAGAAACACGTGGTGTTGTGTGTCAGTTCAATCAAAATTGACCTGCTGATGGATTTCCTAAATGAGTTTTATGCCCACCCTAAACTTGAGGAGCACTATGTCATCATCCTTTGCCCAACTGAGCTGGATGCAGCAGTCAGAAGTGTGCTGCGGATCCCAATGTGGTCACATAGAGTCATATATCTGCAGGGCTCTGCCCTCAAAGACCAAGACTTGGTCAGAGCAAAACTGGATTATGCTGAGGCTTGTTTCATTCTGACTTGTCGCTGTGTGGCTGACCGCAATGCAGCAgATTATCAGACCATCCTGCGTGCTTGGGCAGTGAAGGATTTTGCTCCAGGCTGTACTCTTTTTGTTCAGATTCTCAAACCAGAAAACAAATTTCATGTGAAATTTGCAGATCATATTGTTTGTGAGGAAGAGTTTAAATTTGCCATGCTGGCCATGAACTGCATCTGTCCTGCAACATCTACATTCATCACCCTTCTGGTGCACACCTCACAAGGCCTAGAGGGCCAGCACTCTCCTGAGGACTGGCACAGAATTTATGGCAAATGCTCAGGAAATGAAGTGTACAGTATAGTTCTGAACAAAAGCATCTTCTTTTCTGAGTATGAAGGAAACAACTTTGCTTATGCATCATTTAACGCATATAATAAGTATGGCATCTGTCTCATTGGAGTCTGTCCTGAGGACACTAAGAGCATTCTGCTGAATCCTGGTGCTCAGTATACCATGAATGCCATGGACACGTGCTTCTATATCAGTCTCACCAAGGAGGAAAACTCCTATGTTAAGCAGAGAGAGTGTGGAAACAACAGCAAGACTCAACCGCCAATGGGGAGTGCCATTACAAGACCAGGGACCATGGCCATAGATATACAGGAAATAAGCATTCCATCCAGTTTAGAACCATCGCTCTCAACTGGAGCTAATACATCTGAGAGAAGACAACCAATCATTATTCCTGTTCTAGAACTGCCTGATTCACCTTCTTTTCAGGCTAGCAAGCTACTCAGTGGTCAGTCAAAGAGTCACATAAATGGAGATGAAAGCAATGATGGTTACTTTATAGGATATCCTCCAAATTTACCCTACATTGGAAGCTCGACAATCCTTTGCCATTTACGAAAAAAGAAAATGCCCACATGTTGTATGCATCTGGAAAAGTTTTTGTCCAAGACCTGCAACCACAAAGACGATGAAGATGCAAAAGTGTATAGTTTGAAGAGTAAGCTGGTCATTGTGTCTGTTGAGACAGCAGGAAACAGCCTGTACAACTTCATCCTCCCATTACGAGCCTCGTACAGACCACAGAATGAACTGTGGCCCATTGTGCTGCTCTTGGAGCATGTACCGGATGAAGAATTTCTTGAGACGATCAGTTGGTTTCCAATGATTTACTACTTGCTTGGATCAATCGACAGCCTGGATGACCTGTTGCGTTGTGGCGTTTCTTTTGCTGCCAGCATGGTGGTTGTGGATAAGGAAAGCACCATGACTGCTAAGGAGGACTACATGGCGGATGCAAAAACCatagttaatgttcagactctgtTCAGGTTGTTCTCTGGTCTGAACATCATCACTGAGTTAACTCACTCTGCTAACATGAGATTCATGCAGTTCAGCACAAAGGACTGTCATTCCCTGGCATTCTCCAAACTAGCAAAGaaagaaagagaaaaaggctCAAACCTGTCCTTCATATTTCACCTTCCGTTTGCTGCTGGTAGGGTTTTCAGCATCAGCATGCTAGACACACTCCTCTACCAGTCTTTTGTTAAAGATTATATGATAACAATCACCAGGCTCCTGCTGGGGTTGGAAACTACACCACAGTCTGGTTTCCTGTGTGCCATGAGCATCACCGAGGAGGACCTATGCATTGAGACATATGGCAGGCTGTACCAAAGGCTTTCCTCCACTGTAGGAGATATTCCCATCGGCATCTACAGGACCAAGTCTCAAACAGTTGAATCCCCTGAGACTCCACAATTCCAAATGTCAGACAAGGCATCTGTGTTTGATGAGGGCGGAGACCTAGATGAGCAACATCAGAATCTTCAATGCGAAATACCAGACAGTCAATTGCAGACACAGTCTCTGCGTCGGAGAAGCATGCAGTGGGCTTCCAGTCTCCTTGGGCCATGGCACACTGAGCGTGAGGCAGACAGATTGAGTCAGCATCGGGGTGTCCTGCTTTCATGCTCTGAGAGACTGGAGGTCACAGAGCTGGTCAAGAAACGCATGAAAAACCTGGGCCTATCCACTCTGGGATTTGATGAACAGACCAATATCAAGAACAGCCACGCTTACATCTTAATCAACCCATCTTCTGATACAAAACTGGAGCTCAATGACATTGTGTACATAATCCGTAAAGATACTCTATCTTCCAAGCTGGACAATAACTAACAGCGCTAAGAACAGCAAGAGAAGCAGGTCACAAAAAAAAGAGGAACACAAAGCTGGATAGTCATCTCTAAACAAACACCTTGCTCTGCTTACAATAATGCATGTCTCAATCATATAC
>TCONS_00031988
TAATATTCCagctttatttatacattttcaggATTATCAGACCATCCTGCGTGCTTGGGCAGTGAAGGATTTTGCTCCAGGCTGTACTCTTTTTGTTCAGATTCTCAAACCAGAAAACAAATTTCATGTGAAATTTGCAGGTACTGTTAAATCTGTCTTTAATTCCATACTGTCTCAAATAGTATATACATTCATAGAAACAACTTTTTTAATACAAAGTTATACTGTGATGTCTACTTTCAGATCATATTGTTTGTGAGGAAGAGTTTAAATTTGCCATGCTGGCCATGAACTGCATCTGTCCTGCAACATCTACATTCATCACCCTTCTGGTGCACACCTCACAAGGCCTAGAGGGCCAGCACTCTCCTGAGGACTGGCACAGAATTTATGGCAAATGCTCAGGAAATGAAGTGTACAGTATAGTTCTGAACAAAAGCATCTTCTTTTCTGAGTATGAAGGAAACAACTTTGCTTATGCATCATTTAACGCATATAATAAGTATGGCATCTGTCTCATTGGAGTCTGTCCTGAGGACACTAAGAGCATTCTGCTGAATCCTGGTGCTCAGTATACCATGAATGCCATGGACACGTGCTTCTATATCAGTCTCACCAAGGAGGAAAACTCCTATGTTAAGCAGAGAGAGTGTGGAAACAACAGCAAGACTCAACCGCCAATGGGGAGTGCCATTACAAGACCAGGGACCATGGCCATAGATATACAGGAAATAAGCATTCCATCCAGTTTAGAACCATCGCTCTCAACTGGAGCTAATACATCTGAGAGAAGACAACCAATCATTATTCCTGTTCTAGAACTGCCTGATTCACCTTCTTTTCAGGCTAGCAAGCTACTCAGTGGTCAGTCAAAGAGTCACATAAATGGAGATGAAAGCAATGATGGTTACTTTATAGGATATCCTCCAAATTTACCCTACATTGGAAGCTCGACAATCCTTTGCCATTTACGAAAAAAGAAAATGCCCACATGTTGTATGCATCTGGAAAAGTTTTTGTCCAAGACCTGCAACCACAAAGACGATGAAGATGCAAAAGTGTATAGTTTGAAGAGTAAGCTGGTCATTGTGTCTGTTGAGACAGCAGGAAACAGCCTGTACAACTTCATCCTCCCATTACGAGCCTCGTACAGACCACAGAATGAACTGTGGCCCATTGTGCTGCTCTTGGAGCATGTGTAAACATCATTTTTACACAACTCTTCTTCACTTTCTACTGTTTTGTAGTCATGAAGAGTGCTACAATGTCATGTTTCTGTGTGGTTTCTTTGTCTTTTAGACCGGATGAAGAATTTCTTGAGACGATCAGTTGGTTTCCAATGATTTACTACTTGCTTGGATCAATCGACAGGCAAGAGACGTTATTATGAAACATTATCATGTTTGCTTGTATCCTGGCCTCGAATAATCAATTTGCAGTTGGTCCTCCGG

Function

symbol description
kcnt2 Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 57. Orthologous to human KCNT2 (potassium sodium-activated channel subfamily T member 2).

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-130530-783 Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 57. Orthologous to human KCNT2 (potassium sodium-activated channel subfamily T member 2).

Ensembl:

ensembl_id ENSDARG00000075812

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031987 False 3356 mRNA 0.44 28 12019341 12079718
TCONS_00031988 True 1451 mRNA 0.41 6 12039717 12051183

Neighbor

gene id symbol gene type direction distance location
XLOC_016213 CT573433.1 coding downstream 38036 11976261 ~ 11981305 (-)
XLOC_016212 abhd3 coding downstream 106994 11848510 ~ 11912347 (-)
XLOC_016211 CT573467.1 coding downstream 252137 11760826 ~ 11767204 (-)
XLOC_016210 MFF coding downstream 356418 11651176 ~ 11662923 (-)
XLOC_016209 impad1 coding downstream 370610 11633253 ~ 11648731 (-)
XLOC_016215 gpr158b coding upstream 24671 12104389 ~ 12243213 (-)
XLOC_016216 CR376724.1 coding upstream 144705 12224423 ~ 12224539 (-)
XLOC_016217 dpp6b coding upstream 326995 12406713 ~ 12632761 (-)
XLOC_016218 NA coding upstream 624239 12703957 ~ 12704384 (-)
XLOC_016219 BX908750.2 coding upstream 740281 12819999 ~ 12821531 (-)
XLOC_016208 NA non-coding downstream 461217 11556975 ~ 11558124 (-)
XLOC_016205 BX901918.2 non-coding downstream 681358 11337040 ~ 11337983 (-)
XLOC_016204 BX901918.3 non-coding downstream 688025 11330724 ~ 11331316 (-)
XLOC_016220 NA non-coding upstream 1104509 13184227 ~ 13216269 (-)
XLOC_016224 NA non-coding upstream 1470849 13550567 ~ 13573898 (-)

Expression


Co-expression Network