XLOC_016220


Basic Information

Item Value
gene id XLOC_016220
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13184227 ~ 13216269 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033781
gcagctgggaagCATTTGTGGAGCTCTACAGCAGCCAGAGGGATTCTGTGTTTCACAGTTCATGGTCATCAATAGTAACGGTCTTTGGTCTAGCTGCTCTCGGGGCTGTTGGCTTGACCATAGGAGCCTACCTTGCTCAACAATAAGGAACCTTCTGCTTCTTCACACGCCTTCCCTCTTTTCTATCGATTCAACACTCTCTGTGCTGTCAAAATTCCATTCTCTGCTTTCCCCAAAAGACATTCATGTCCCAAGACTGATCCTCTATAAAGCCTTGCTCCCACTCTTTTCAAGTCTTTCTTTCCCACTTTATTTCAAGTCTCTGCTTTCAGaaagtcagaaaaaaaaagaaaattaatgcacAGCCGACACATAATGAGAGGTTGGCAAAAAAGATAGACAAAAGGTGAAAGACACTGATGACATTGTTTAaattaattcacattttaaataattttgagtGTAGTACATAACAGACTTACTGGATTCCTTATATAAATATGAAGATGATTATAAAGATATAATTATCTGCATGAAGCATCTGCACTAAAGTAGATCCTggttttttaaacaagtcttgtTTTTTGTAGGATAGTTTTATAGTGTATGAAGAAAAAGAAATAGTGCAACTGTTAAGGCAGTTGTTTAGCCGATAGTGTATGTAAATGTTTAGTCACAGTATCCCTTGCACACATGGCAATTTTGATTTGATTATAGTCGACTCTGCCGCGATTGCTCATCTAAAAAAAGAATGCTACCATCAAAACCACGGTCCACACTAAAAAAAGTAGACTGAGACCACTGGACAGTTAATTCTCTAATCACTTCCAAAGGACTCTGCTGCAGTTAAAATGAAGTATGAATGGATCATGGAGTTAAGACAACTGATGAGAAACTAAAACCGGACAAGATTCACCATCAAAAAGGCAGAAGGCTTAAACCATCTTTAAACATCTAATGCAACACAGAAAGTTCAAAACAAACAATGTCcaaaaaaggaaccaaaaacctTGTCAAAATATTCAATGTGGCTTCAGTTATTCAACTCTAATCAtgtgaagctccaagaacatttctgtgtatcaaaaaaaaaaaaaaaaaagaaattccacAATTATTATGGGCGATTTGACGTTTGCAGTTGGGCTGCTGACTCTAATGGCAATACTTACTAAAAGCACAGCCCGACGACCTGCCGTGGGAGAAAAGGTTCATCATTACAGTTTTTAtaattacaattgaaccactgaaCTTACATGGGATGTTTTGAAAATAGTCTTGATTCCTTTTCCGGacattgaacatctctggactgctgtctatggaggatgaggtaCCTTATATCTTAATTTTTGCTCAGAAGATAAATGAAGGTCTGAGGagggttttaatttttaattaagggttttttattttattagctctTCACAAGTTTTCTGGTGATAAAAACACCATAACGTGTGTATACTGTGTATTGTCTTTAACCCAGCATACAATATTGTTTTGAATGTTCAGTAAGTTCTGTCACATAAAATTTGACCTAAAGTATCACATTGTAAACACTGAGCAAACCAGGACCATTGGTGCATTCACATCATGTTGTGGTTACAAGATTAGTAGCATTCTCGTGGAAATTGTAAATAGAATTTGTAAACTAGAAGCTTTTAGACAGCTTATTTAAGTTTCTTGTACCATCTGACTGTTCTACCACTTAACCACTAAAGAATTTAGATTAATTTAGGGTGCTATGATCAGGTGTTAAGAGTTGCATACACAGATATGCATAACTTTAAGTCAGAGAACATTAAACAGCCCAGAAGAGAATAGTACGTCTTTCAGGTACATCCCTCAAACATCTCTCTTCAGAATGTGACAAGCACACCATGTGTCATGATAAGAAACAAAAATCATCTTCACGTTTGGAAATATTCTACATATTTTAGCACTAATTAGAAATTCAGAGCACCTAATGTCAGTCACCTAAGCAATTACATACATTAGCTTTTGAAAATATTACTTTGTTTGATTTATTCAGTtacaaaatatttgttaaatgaatttaaatgtaaataaattgtatacATGAGTAACTGTAATAGGATGTAATAGGCTATTAAGGACTCTATTTAGCAAAACCAAATACAATTATCCAAAACTAGCTGAATTATATAAACCCAATGCACTTCTTCCTGtttattcattttgattttagtggaacaaatgaaaaatacaatatacaatacaGATCGCAGATGTCCTTATACACAAAGAATCCCAGCTTCAGAAGAGGCAACAACAAAATGTCCatgttgtaaataaaacaaatattagtaATTGATTTTACTTAGTCATTTGTGATGTATAATggcaatttaaattaaaacaccATATTTCATGTGGTATATTTCATGTGGCTTGAGCCGCATGCGTTTCATTCTGCATTCTTCATTTGTCATTCTGACAAAATGTCTTAAATCAAATATATTCTAAATGCTTTACTGTAAAACATTGaattaataagaaatgttttcaATTAAACTAAGTTATGGTTTTAGGGGGTCATCTGCTAGTGGCAAATAATAATGGCTACCAAAATATAATTATAGTTTAGCTTGACATAAGCAACAAACACTTTCTTAACCTATATCAAGATGtattctataaaaaaaaacagtcttaaCCAGTCATGTTTCTCAACTACATTTAGGGATTTTACACAACACTGAAATAATTAACACTTTAAAACAGGTTTCAAAGTAAAAGCTATAACTTCATGCATTTTAAAAAGTTCAATTATATATGCCCTTCGAAAAGCTTTTAATAtggatttaaatattattattcaaccCACATCAGAAAATAGTTTGTGACGCACTCCAAATGAAACTGAACaaatttgtaaattatattaataaattagcagtttctttgtattttgtgattcgtgtttttttctttttctctgtttATTAAGCCTTTCGAATTGCATTACAggactttgattttattttctttcaacaacttttaaccttgaaaagtttgagtCTGGGTTGGTGGTTGTAGTTCTCAGGGAAAggcttgtaataaactgccagtacattttctgttattttaaagatgtatttttctatatattatatCTTATCCATTATATTAATTCaaacaaaatgtcaataaatttCACTTTGTTAATGTTGTGATAACTAGCAATGTAGCCGTCGCGAATGCCTGTATAACACTCCTTGTCGTTGTGGAGCTGGGTCTATACGCCCCCCTCACTTTCATaaacagaccatttagaaacagatgattaataattatatgaacattttGGATCTTATTCAGCTgccccccacttttaaaatgtctactACGCCCCTGCTACCATCTGATTCTATGTTGAAACTTGCCTGCCTGACTACTTCAATGAAAGCTGCGTTGATATCTAACCCTTCTTGTTTACACCATTACAGACAACTAAGCAACAGCATGGATCCAGCAGTATTTTTAGTTCATCTATGTCAAGGTGAGCCTTTTCCTGAGAACTACATACAGGATTTTCTGAACATTGCTGAATggagataaataaaataaaataaatgaaaaaaaaaaatacagcatcaAGTCttatttctcctttttttttaaaattgtatacaataaacacaaattaaagtAAACACTTGTATAGCAGGATGTTTTGTTGGACATTGTTGGCGTGATGTTTTCCACAACTTTATGACCAAGAATTTAGTATATTATAATGTCAGAATCTGTAATCACACTAGAGCTCTCTGTGCACACAATATAATTGATAAGATTACAAACTTCAAATTGCAGCACATTCAtcaaaaaattaaacaagcaaACGTACTTGAAAAAGTTTATTCTGCTAATTTTAAATGGTAATTTTACAGTCTGTTTAAACAATTCTGAAATTAATTGCATTCATGCCAAAAAAGAGATGTAGCCTAAATCAGTCtaacaatacatttgttttgACGAGAC
>TCONS_00031995
GGGTGACGTAGCGCAGGAAACACCTCTCTGCTATGAAGGGGACAGTCTGACTCCATCTGAAGCAACTGCGCTTAGCAGACGCCTGTGAACACAACTTAGACAGCAAATCAGCGACATAACTGTCATCCGTTTAGCATTTAAGTCTACATTCGACAGTACGCCACTGAGAAATTCGTTCTTCACACTGCTCCGTGCGAGACGAAACTCACAAGTGCGCCCGAACATCGGTGATCTGCATCTTCCGTCTCACGCACCTCTGGACTCTAACAGGGATAAACGATGTCTTACCGCGCGCGCAATTTCCACCCGAAACACCAGAGACTTTCTTACCTATGCTTTTAATgcgtgttttttatttttattctgaaaTTAAGGAAGATGCTCACATCCTCTGCTTAATGTCAGGCATCACTTCTCGGAACAGAAAGTGGGCGTTTTTCTACAACCGAAGGATTCATGCGAGCGCTGCAAGTTCGCTGTTTAAACGATAtacatgttaataaaataattcgCTTTATTGCTTTGATGTGAAGAAAGTGATGCTGAAGATGCGTCAGGGTAAATAAGAACGCAGTGGTAGGCTACTGATATATAGCCTATATGGCACAGGAGAATGTGTATAATAACCGCAGTATAGTGGAAAATTACATCCACCATAAGCTGTGGAAGAAGGGATACGTTTGGGAAGTGAATGGACATGACAGTGTCTCGAATGGACTGAGTATGGGGAGGCAGGAGAACAGCGTCGTCTCTCCCAGCTCCCGTCACGACCCATACAGCGCTCTTCATAACGTGCTACGGGAGGCTGGGGATGAACTGGAGAGTTTATATCAGTCGGACTTTGCGGAGATGTCCAAACAGTTGCACGTCACGTCCATCACGGCACATCAGCGCTTCAACGCAGTCATAGATGAGCTGTTCAGGGACGGCGTGAACTGGGGCAGAATAATCGCTTTTTTCGAGTTTGGGGGCACCGTTTGTGCTGAATGCGTGAATAAGGAGATGACGGGGCAGGTGGATAACATTGCTGTCTGGATGGCAGACTACCTGAACGGGCCGCTTCACGGTTGGATCCGGGAGAACGGCGGTTGGGAAGCATTTGTGGAGCTCTACAGCAGCCAGAGGGATTCTGTGTTTCACAGTTCATGGTCATCAATAGTAACGGTCTTTGGTCTAGCTGCTCTCGGGGCTGTTGGCTTGACCATAGGAGCCTACCTTGCTCAACAATAAGGAACCTTCTGCTTCTTCACACGCCTTCCCTCTTTTCTATCGATTCAACACTCTCTGTGCTGTCAAAATTCCATTCTCTGCTTTCCCCAAAAGACATTCATGTCCCAAGACTGATCCTCTATAAAGCCTTGCTCCCACTCTTTTCAAGTCTTTCTTTCCCACTTTATTTCAAGTCTCTGCTTTCAGaaagtcagaaaaaaaaagaaaattaatgcacAGCCGACACATAATGAGAGGTTGGCAAAAAAGATAGACAAAAGGTGAAAGACACTGATGACATTGTTTAaattaattcacattttaaataattttgagtGTAGTACATAACAGACTTACTGGATTCCTTATATAAATATGAAGATGATTATAAAGATATAATTATCTGCATGAAGCATCTGCACTAAAGTAGATCCTggttttttaaacaagtcttgtTTTTTGTAGGATAGTTTTATAGTGTATGAAGAAAAAGAAATAGTGCAACTGTTAAGGCAGTTGTTTAGCCGATAGTGTATGTAAATGTTTAGTCACAGTATCCCTTGCACACATGGCAATTTTGATTTGATTATAGTCGACTCTGCCGCGATTGCTCATCTAAAAAAAGAATGCTACCATCAAAACCACGGTCCACACTAAAAAAAGTAGACTGAGACCACTGGACAGTTAATTCTCTAATCACTTCCAAAGGACTCTGCTGCAGTTAAAATGAAGTATGAATGGATCATGGAGTTAAGACAACTGATGAGAAACTAAAACCGGACAAGATTCACCATCAAAAAGGCAGAAGGCTTAAACCATCTTTAAACATCTAATGCAACACAGAAAGTTCAAAACAAACAATGTCcaaaaaaggaaccaaaaacctTGTCAAAATATTCAATGTGGCTTCAGTTATTCAACTCTAATCAtgtgaagctccaagaacatttctgtgtatcaaaaaaaaaaaaaaaaaagaaattccacAATTATTATGGGCGATTTGACGTTTGCAGTTGGGCTGCTGACTCTAATGGCAATACTTACTAAAAGCACAGCCCGACGACCTGCCGTGGGAGAAAAGGTTCATCATTACAGTTTTTAtaattacaattgaaccactgaaCTTACATGGGATGTTTTGAAAATAGTCTTGATTCCTTTTCCGGacattgaacatctctggactgctgtctatggaggatgaggtaCCTTATATCTTAATTTTTGCTCAGAAGATAAATGAAGGTCTGAGGagggttttaatttttaattaagggttttttattttattagctctTCACAAGTTTTCTGGTGATAAAAACACCATAACGTGTGTATACTGTGTATTGTCTTTAACCCAGCATACAATATTGTTTTGAATGTTCAGTAAGTTCTGTCACATAAAATTTGACCTAAAGTATCACATTGTAAACACTGAGCAAACCAGGACCATTGGTGCATTCACATCATGTTGTGGTTACAAGATTAGTAGCATTCTCGTGGAAATTGTAAATAGAATTTGTAAACTAGAAGCTTTTAGACAGCTTATTTAAGTTTCTTGTACCATCTGACTGTTCTACCACTTAACCACTAAAGAATTTAGATTAATTTAGGGTGCTATGATCAGGTGTTAAGAGTTGCATACACAGATATGCATAACTTTAAGTCAGAGAACATTAAACAGCCCAGAAGAGAATAGTACGTCTTTCAGGTACATCCCTCAAACATCTCTCTTCAGAATGTGACAAGCACACCATGTGTCATGATAAGAAACAAAAATCATCTTCACGTTTGGAAATATTCTACATATTTTAGCACTAATTAGAAATTCAGAGCACCTAATGTCAGTCACCTAAGCAATTACATACATTAGCTTTTGAAAATATTACTTTGTTTGATTTATTCAGTtacaaaatatttgttaaatgaatttaaatgtaaataaattgtatacATGAGTAACTGTAATAGGATGTAATAGGCTATTAAGGACTCTATTTAGCAAAACCAAATACAATTATCCAAAACTAGCTGAATTATATAAACCCAATGCACTTCTTCCTGtttattcattttgattttagtggaacaaatgaaaaatacaatatacaatacaGATCGCAGATGTCCTTATACACAAAGAATCCCAGCTTCAGAAGAGGCAACAACAAAATGTCCatgttgtaaataaaacaaatattagtaATTGATTTTACTTAGTCATTTGTGATGTATAATggcaatttaaattaaaacaccATATTTCATGTGGTATATTTCATGTGGCTTGAGCCGCATGCGTTTCATTCTGCATTCTTCATTTGTCATTCTGACAAAATGTCTTAAATCAAATATATTCTAAATGCTTTACTGTAAAACATTGaattaataagaaatgttttcaATTAAACTAAGTTATGGTTTTAGGGGGTCATCTGCTAGTGGCAAATAATAATGGCTACCAAAATATAATTATAGTTTAGCTTGACATAAGCAACAAACACTTTCTTAACCTATATCAAGATGtattctataaaaaaaaacagtcttaaCCAGTCATGTTTCTCAACTACATTTAGGGATTTTACACAACACTGAAATAATTAACACTTTAAAACAGGTTTCAAAGTAAAAGCTATAACTTCATGCATTTTAAAAAGTTCAATTATATATGCCCTTCGAAAAGCTTTTAATAtggatttaaatattattattcaaccCACATCAGAAAATAGTTTGTGACGCACTCCAAATGAAACTGAACaaatttgtaaattatattaataaattagcagtttctttgta

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0097458 obsolete neuron part cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-110411-185 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in extrinsic apoptotic signaling pathway in absence of ligand; intrinsic apoptotic signaling pathway in response to DNA damage; and negative regulation of intrinsic apoptotic signaling pathway. Predicted to act upstream of or within apoptotic process and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum membrane; mitochondrion; and nuclear membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; carcinoma (multiple); hematologic cancer (multiple); intracranial aneurysm; and prostate cancer. Orthologous to human BCL2 (BCL2 apoptosis regulator).

Ensembl:

ensembl_id ENSDARG00000089109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033781 False 4008 lncRNA 0.33 2 13184227 13189174
TCONS_00031995 True 4017 mRNA 0.37 2 13185302 13216269

Neighbor

gene id symbol gene type direction distance location
XLOC_016219 BX908750.2 coding downstream 362696 12819999 ~ 12821531 (-)
XLOC_016218 NA coding downstream 479843 12703957 ~ 12704384 (-)
XLOC_016217 dpp6b coding downstream 551466 12406713 ~ 12632761 (-)
XLOC_016215 gpr158b coding downstream 941014 12104389 ~ 12243213 (-)
XLOC_016216 CR376724.1 coding downstream 959688 12224423 ~ 12224539 (-)
XLOC_016221 kdsr coding upstream 7486 13223755 ~ 13254821 (-)
XLOC_016222 vps4b coding upstream 39717 13255986 ~ 13333991 (-)
XLOC_016223 nmur1b coding upstream 159830 13376099 ~ 13382726 (-)
XLOC_016224 NA coding upstream 334298 13550567 ~ 13573898 (-)
XLOC_016225 NA coding upstream 455843 13672112 ~ 13673864 (-)
XLOC_016213 CT573433.1 non-coding downstream 1202922 11976261 ~ 11981305 (-)
XLOC_016211 CT573467.1 non-coding downstream 1417023 11760826 ~ 11767204 (-)
XLOC_016227 CU657977.1 non-coding upstream 567124 13783393 ~ 13786658 (-)
XLOC_016228 NA non-coding upstream 659426 13875695 ~ 13877521 (-)
XLOC_016230 NA non-coding upstream 786126 14002395 ~ 14004942 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_02143355_02186281 BCL2B coding CI01000004 null 2142676 ~ 2186771 (+)