XLOC_016237


Basic Information

Item Value
gene id XLOC_016237
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14438985 ~ 14440380 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033790
AACAATAAAAGCAGTCTCCAGGTGAGCAGTCTGTTGTTTGCTGATGACTGCATGAAGTTCGTTCATAGCAAGCTTGGCATGAGCACCAAGAGGAATATAAGCAGCAGCCACAGTGGTGGATGTGAACTCCCTTGGTAGATAAAACGGTCTACATTAAACCATTAGAAATTCCAGGCTAGCAGAGCAATGTCTCCCAATTGAAATGGGGTGATCCCCAAAGGGGAGGGGTTTCCCATTTGTATGTGTGTAATGGGGGATCCCCAAGGGGGAGGGGTTTCCCATTATGTTTAGGTGAATGGAGTCAGAAATTAAGCTCACCGCCCCTTTAAAAGTGTGGAGGTTTCCCTTTACTTCCGTTTTCTCCCTGGCATGGAATAGTGGCGGTGTCTTGAGTGCGTGCAAACTTTTGATGTGTATTGAGCAGTAAGCCTGCAGTGTTTATAGAAACCTGTGCAAGGTTGTCTTTCTGTAATTCTGCTTCTTTGGCCTGCGGAAGTGCAATCTCATCAGCGAGTAACGGTATGTTTCTGTTTATGTCTCCGGTTATTTCTAGTGAGTTTTAGTgctgttaattaatattaaataattcttTCAGCTGTATCCTTGTATGATCGGTGGATTGCTCACCATTTGTGTTGAGAGCCAGTTGACTGGGCTGCGGGTAAGTTTCTATTTGAgagtttgtaaatgttttatttagaaatgtgattttaaaatttgacatgccAATGAATATTGAACGTTTTTTTATAGACTGCCCGTTGCTGTTTTGCTGCTGTCTGGTGACCCGATTGTCCTACAGAGAGGGGATTCACTTTCCTTTCGGCACCTGATTGTGTGTGACCCAGTCGCGTCAAGTCAGAgtatgtggttgtgtgtgtgtgtgtgtgtgtgtgtgcacgcttaTTGTGCGAGCGTGCGCTCATTCTTTGACATTGGTGCGTTTGtgagtgtgcgtgtatgtgtgtgcgtgttgtgaTCTAACTATTTGGTgggtttgtattttgtttgtgtaaattgtGAAGggctgttgttgtttattttccaTTTCAATACTAACAGCAAGGATTGCCTTATATGGGGAgggttgttttattttggctttgtTTGTTATGCGGGTGGTTTATTTTGAGTGTGGGttagtttctttctttattaataaGGAGTGCgttttgttttgttgcattttttattttcccCTTGATCTTTCCAAAATGTAGGTATATCCTGTGTAATATTGAGTGTGATTAAACAGTGGTCACTGACAACTATTATACAAACAGAATTGTATGGTTTTGTGACTCATTGTAATTGACTACATGTTTTatatgattacattttaaaaatatgtatatatttaagtGTCTAATAAAAGAAGATTGTTTGTACACATCAA

Function

GO:

id name namespace
GO:0097060 synaptic membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033790 True 1396 lncRNA 0.40 1 14438985 14440380

Neighbor

gene id symbol gene type direction distance location
XLOC_016236 NA coding downstream 12318 14394120 ~ 14426667 (-)
XLOC_016235 sgip1b coding downstream 48358 14276639 ~ 14390627 (-)
XLOC_016234 tctex1d1 coding downstream 166902 14207559 ~ 14272083 (-)
XLOC_016233 CU927934.2 coding downstream 409824 14021956 ~ 14029161 (-)
XLOC_016232 CU927934.1 coding downstream 428327 14009630 ~ 14010658 (-)
XLOC_016238 pde4bb coding upstream 3896 14444276 ~ 14587224 (-)
XLOC_016239 CT583708.1 coding upstream 49562 14489942 ~ 14491843 (-)
XLOC_016240 NA coding upstream 73786 14514166 ~ 14515594 (-)
XLOC_016241 CABZ01026681.1 coding upstream 214754 14655134 ~ 14656669 (-)
XLOC_016242 NA coding upstream 224269 14664649 ~ 14676427 (-)
XLOC_016231 CU927934.3 non-coding downstream 429457 14007938 ~ 14009528 (-)
XLOC_016230 NA non-coding downstream 434043 14002395 ~ 14004942 (-)
XLOC_016243 NA non-coding upstream 296663 14737043 ~ 14831123 (-)
XLOC_016244 NA non-coding upstream 348403 14788783 ~ 14789247 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G30104 NA non-coding NC_056702.1 CM032071.1 21333245 ~ 21721910 (+)