XLOC_016245 (si:ch73-366i20.1)


Basic Information

Item Value
gene id XLOC_016245
gene name si:ch73-366i20.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14790294 ~ 14798305 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032028
GTGAGTGAGCGACGCTGGATCCTCTCAACGGCTGCCATCGAACAGCAGAAGTTAAGATCAAGGAGGAGTTCAGACGCATCACAACGGTTTCCTTGGAGGAGACATTCCTGCGGAAGCTTGATGAGTACACACCTGGTCTTTTGCGGCTAATGCGTGCCAAAGGAGGAGCAGCTGGTTGCAAGATGCGTCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCATTAACTACCTCGGTGAAAGGCAAGAAGATCTTTTCCATGAATGGCAGGAATGTGAGGAGTACACAGACAAAACAATGAAGGTGATTGTGAAGCACAATGTCATGGCTGAGGAGGACGATTTGTCTATTGTGATCGAGGGAAACCAAGTGATGGAAGGATGTGGAAGCCGAACAAAGGCATGCATACTGCTGATGGGACTCATATATGCAATCAACATTGAATATCCAAAGGAGCTGAAGAACACATTTGAAgcttttcaaaaactttttttggaAATTGATGGGGCAAAACTTCTAAAGAAAGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCTTCTTGTTTAAAGGGGATCCTTTGTTTGAACATACCTTGATGGAGTTGCAATGGactgttttatatttttcttcttttcccTCATTTGCTCTACATACAGACACAGCCCTCTCCATTGCTCTGTGTTTtcccccatattgacagaaaaggAATACTAATAGATAGTGGCCTGAACAATTTTGATCTCACCTACCCTCTTCcccatttgtttgcttatttcatTCTGATCCTATCTGCGAGAGTGAGAGtaaggacaaaaaaaaagaatgatggtattttgttttacttttatctgAATATTTAATACTGTACATGCACAGAAACAACCacgagtttgtgtgtgtgcttttggcttttaaaatataataagtgGCCTCTGAAAGAGTTGTATGCAAGTAGCCAATTATTCAGAAACAACATTTGAAAATTATCTTAGTGAGTTATAAAAcaggtttatttgttcattattgtGTGAAGCTGTTGCACTTTATTTAGCACTTTATTATGTGTTTAGATACAAGAAAATCTTGATGTGATTGAACATTCAGCACTGCTCTGATTTCCTCACTtctcttttattttccttttttttgctcCCTTCTCTCCTCACTTTTCTTTTCCTCTCTGATCTGGATGTGTTTTATTATCCAACATTATTGAAACAACATTTGAAACTGTTGTCTTGAGTTATAACAcaggtttatttgttcattgttgtGTGAAGCTGTTGTACCTTATTTAGCACTTTATTCTGTGTGTTTTGATAATTTGGTGCATCAGTGCTGCATATAAGCAAGACtgttaagttattttgttttatgaatgTATCTGGATAACAGACCACTGGTCAGTTACTGTTGTGTAAATCTGAAAAGACACAAAGAGTTTAGTCTAAGAGTTTAGATAAAAGAAAATCTTGATGTGATTGGACATCCAGCTCTGCTCTGATCTCCTCACttctcctttttatttttattttctttgctcaCTTCTTTTCTGCTCTGATCTGGATGTCCTAAAACAGGGAAATGTTTTATTATCCAACATTATTGAAAGATTTAATAGATCAGCGAGTTATAAAACATGTTCATTACTTGAAATGTTGTGTAAAGCTGTTGTgctgcactttattttaagtgtgttttaggATTTTTTGGAATAAAAACATTGAGTTGATAACCCA
>TCONS_00032029
GCGTTTTTGAGTGAGTGAGCGACGCTGGATCCTCTCAACGGCTGCCATCGAACAGCAGAAGTTAAGTTTGAAACTGTCGCTGGCGTCACCGTGGCCCGGCACACACCAAGCCGACAGCCGGCCGTTGAGCAACGTCTGCCAGTCGGTCAGGCAACTTGTCTGTGTATGTGGACACTCACTATTTGACCCCTTCTTCAGTTTCTCTTGTCTGTCCTCCACAAGCAGAGACTCACTGATAGACCACTGTTACCCATTCTAGGCCTGACACATCCAAACACGACCACACCGCAAGTGTATCCTTTACAGATCAAGGAGGAGTTCAGACGCATCACAACGGTTTCCTTGGAGGAGACATTCCTGCGGAAGCTTGATGAGTACACACCTGGTCTTTTGCGGCTAATGCGTGCCAAAGGAGGAGCAGCTGGTTGCAAGATGCGTCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCATTAACTACCTCGGTGAAAGGCAAGAAGATCTTTTCCATGAATGGCAGGAATGTGAGGAGTACACAGACAAAACAATGAAGGTGATTGTGAAGCACAATGTCATGGCTGAGGAGGACGATTTGTCTATTGTGATCGAGGGAAACCAAGTGATGGAAGGATGTGGAAGCCGAACAAAGGCATGCATACTGCTGATGGGACTCATATATGCAATCAACATTGAATATCCAAAGGAGCTGAAGAACACATTTGAAgcttttcaaaaactttttttggaAATTGATGGGGCAAAACTTCTAAAGAAAGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCTTCTTGTTTAAAGGGGATCCTTTGTTTGAACATACCTTGATGGAGTTGCAATGGactgttttatatttttcttcttttcccTCATTTGCTCTACATACAG
>TCONS_00032030
GCATCCTCAGAGGTGTCAAACTGCGCATCTTCAAGTTCCAGTGATACCATTATTCTTCCTGATTCATGTCGCTCTGCTGCATGGCCAGTGCCATTCCAAGTACCAGAGTTTTCCAGAGACATAGAACTAATCCTTGCAGAGGCAAACAACTCCTATCATGCCACTGGAAGACACTTCATGGATGCCAGTATTAAATCAGCAATAATGCAAGAGcttgcaaaagtaattttttcatACACCGCTTACCCTACCAATGAGCAGATCCTCTCAGTAGCTGAAGCCTTGGTTTCTAAGTTTCCGTGTCTTAGGGAGCCAGGATCATTTGCGGGATTATATGGTTGGCAGCAGCGCATAAAAAACAAGATGCACAATTACCGTGCCAAGCTAAGATCTCGAAAATATTCTTACCCCGAAATTGAAATCAACACCTTAAAAAGGAAGCATCCCGCTGATGTAGGGcctttgaaaaatataaaaaagcccAAAAAAGCAGAGGTTAATTACCTCCCTCCACACCCTACTGGTGAAAGCCAAGAGACACTGGAGAAAGAGAGACTTGAATTAATTTGTGAaattacaaagaaaaacaatgcaaagaTAATTGcagataaaatgaataaaaccttCTCTAGCCGAAGAATTGAAGTGGTCAGCCTCAGCCCCTCTGTTGATGTGTTTAAAGAAAGGTGGCCAGCATTATTCACTGAGGCTCAGATCAAGGAGGAGTTCAGACGCATCACAACGGTTTCCTTGGAGGAGACATTCCTGCGGAAGCTTGATGAGTACACACCTGGTCTTTTGCGGCTAATGCGTGCCAAAGGAGGAGCAGCTGGTTGCAAGATGCGTCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCATTAACTACCTCGGTGAAAGGCAAGAAGATCTTTTCCATGAATGGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032028 False 1782 mRNA 0.37 4 14790294 14798295
TCONS_00032029 False 949 mRNA 0.46 6 14791377 14798305
TCONS_00032030 True 959 mRNA 0.44 3 14791951 14793343

Neighbor

gene id symbol gene type direction distance location
XLOC_016244 NA coding downstream 1047 14788783 ~ 14789247 (-)
XLOC_016242 NA coding downstream 113867 14664649 ~ 14676427 (-)
XLOC_016241 CABZ01026681.1 coding downstream 133625 14655134 ~ 14656669 (-)
XLOC_016238 pde4bb coding downstream 203070 14444276 ~ 14587224 (-)
XLOC_016246 NA coding upstream 135493 14933798 ~ 14949626 (-)
XLOC_016247 CR788249.2 coding upstream 140281 14938586 ~ 14940003 (-)
XLOC_016248 NA coding upstream 164188 14962493 ~ 14964219 (-)
XLOC_016249 hccsa.2 coding upstream 184078 14982383 ~ 14987282 (-)
XLOC_016250 CR788249.3 coding upstream 196088 14994393 ~ 14994490 (-)
XLOC_016240 NA non-coding downstream 274700 14514166 ~ 14515594 (-)
XLOC_016239 CT583708.1 non-coding downstream 298451 14489942 ~ 14491843 (-)
XLOC_016237 NA non-coding downstream 349914 14438985 ~ 14440380 (-)
XLOC_016253 CR392002.1 non-coding upstream 303798 15102103 ~ 15107716 (-)

Expression


Co-expression Network