XLOC_016246


Basic Information

Item Value
gene id XLOC_016246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14933798 ~ 14949626 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033358
atgtcACCAGTAGGCTATGTTTTAACTTCATCCCTACGATATGAATGTATAATTCAAGTAAATAAGCTCTTacctttctttgttttctttcaacATGTCGGTAGAAGACAAATTATTGCTGATTTTAAAGACATTATTGTCCTAAACCTAGCCACGCATTGTGTGATTATGGCTATTTCTGGTTACACGTTTAAGGTGATgacgtgctgctgctgctgcctgcTGATATGGTGCGGTGGCGTAAATAAAAGCTGGCATGCAGCCTGAGAGATCGCTAAATTCATGTTATAGTTTCAtgctgttatttattcatttttaatatctttatttgtgttgtgaatgATGTGGACTCGACTGGACTCGTGATATTTTCCGAGTCCAAAATGTCCAAGTCTGAGTCAAGTCCGAGTAAAAGTTTCCCCAAGTCCGTGTCCAATGAAAACTGGACTCGAGTCCATGTTCGAGTACCCCATCATCAGATAACTAAAAAGTTGAAAACATTGTACAGTACATGTACCTGTTTAAGAGTCTCTTTCTGTTGGACCATTTATATCTGTTGATGAAAGCGATTGTTACATATTGTGTAACCTTTATTTTGACAATGCTGGTACAGTATGTATTGTTCCTGTGTGTTGTATCCTCTAttatctgtctctttctctctctccgctTAAGCGGAGATCAGGTgcagccagcctgatctcacgaggaaacataagtgTTTTACTTTTCGTCAGATTAGTTTTAATTCTTACGAGCTGTGAGAAGGGCGGCGGCAATTATAAAGGCACACTGTTGACGCTGTTCATTGAGTTCTCTTCCTGTTTTCCCTCACTGTTGTGTGTGAGCAGATCACTCTAAGTTCTCTTTGTGGCAGTGCTATCTTTCTGTGTGAAACCATTTTTCcaaagtcatctggtgagatactctgtgACATATGGTAATGGGACGGTATTTTGTGTTAGCTGTGGCTAAATGTTTACTTACTGCTCATTGATCTAAGGGAAGGCCCTTTTGCTTTTGTCCCGTTTTCTCCTGTTTAATGGATAGTTAAGGAGGGTAggattgttgttttatttacagaGCTTTATTTTCGGTTAAGAAATGTAATATTAGGTAGCttaccttgttttgtttttttttagccttTTTGTTGCATGGTTCTGATACTGGAAAtagttgtttaataaatctgctaCCCCTTTTTGACATCTTGACCTGTATGTGTATGCTTTGGGAAGCAGGAACAGGGACTCTGGGTGACCTTTTTTAATAGTGGTCATCCTTATAATTATGTGCGAGGTGCATCCACTACGTAACAATGACATTGAACCATATAGACATACAGTTGAGGGAAGGTTAAAAAATTTGAATATGCTCACAACTTTGACTAGCCAGCTACCGAGAAAGCTGATGTCATTGGGTTAGTGAGAAGTTTTCCAATATTGTTTAGTGACATTTTTGATATAACATCCTTTATTGAGCATGATATTGATGTTGATTTTACCCAGCCGATAAAGCAACATCTATATTGTGTTAATCCACTTAAATGgtcatttttacaaaaataaattgattacATATTGGAAAATCACATCCCTGAGTCCAGTAACAGTCTGTGGAGTTTGCCGTGCTTGCTGGTAGACAAATCTGATGGCACATTTTGATTTTGCACAGATTATTGACTGGTAAATGCTGTACAATAATGACTGCTATCCTTTGCCAAGAATAGATGATTGTGTGGATCGTGTAGGTTCTGTGTATGTTTCAAAAGTTGACCTGTTTAAAAGATACTTTCAGGTGACGTTAACTGAGCATGCAAAAGAATGATCAGCATTTATCACCCCTGATGCTTTTCTTAATTATTGGGTGATGGCGTTCAGAATGAAAAATGCTCCAAGATCTTTTCACAGTGTTGGCTGGTGTCCCCAATCCCGAAGCGTAATTGGATGATATGGTTTTACACAGCTCCACATGGCTGGAACACATAATTTACTTCAACAAGTCTTTAATCAACTGGCAGAGGCTAAGCTTACTTTCAACTTGGCCAAATGTGAATTTGGTAAAGCCGCTCTTGTCTATTTGGGTGAAGTAACTGGTGTTGG

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033358 True 2105 lncRNA 0.39 2 14933798 14949626

Neighbor

gene id symbol gene type direction distance location
XLOC_016243 NA coding downstream 102675 14737043 ~ 14831123 (-)
XLOC_016245 si:ch73-366i20.1 coding downstream 135493 14790294 ~ 14798305 (-)
XLOC_016244 NA coding downstream 144551 14788783 ~ 14789247 (-)
XLOC_016242 NA coding downstream 257371 14664649 ~ 14676427 (-)
XLOC_016241 CABZ01026681.1 coding downstream 277129 14655134 ~ 14656669 (-)
XLOC_016248 NA coding upstream 12867 14962493 ~ 14964219 (-)
XLOC_016249 hccsa.2 coding upstream 32757 14982383 ~ 14987282 (-)
XLOC_016250 CR788249.3 coding upstream 44767 14994393 ~ 14994490 (-)
XLOC_016251 hccsa.1 coding upstream 48986 14998612 ~ 15033163 (-)
XLOC_016252 si:dkey-10f21.4 coding upstream 85464 15035090 ~ 15041846 (-)
XLOC_016240 NA non-coding downstream 418204 14514166 ~ 14515594 (-)
XLOC_016239 CT583708.1 non-coding downstream 441955 14489942 ~ 14491843 (-)
XLOC_016253 CR392002.1 non-coding upstream 152477 15102103 ~ 15107716 (-)
XLOC_016258 NA non-coding upstream 687593 15637219 ~ 15650590 (-)
XLOC_016263 NA non-coding upstream 1553154 16502780 ~ 16506795 (-)

Expression


Co-expression Network