XLOC_016251 (hccsa.1)


Basic Information

Item Value
gene id XLOC_016251
gene name hccsa.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14998612 ~ 15033163 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032034
TCCGAGGCATGTGAACGACATTGACAGTAGAGAAACTGATGAGAGACACTATGTCCAGTCCTACTGGCACCGTGAAGGCGGAGGGCATTATGGTGCCTGATGTTGGCGGCGCACCACCACAGGGCTGTCCAATGCATCGCAATGTTAATGAAAGTGTTCCTCCTCCAGAATGCCCAATGCATCAGGCATCTAGAGATCACACGAAGAAAGCTCCAGATGTACCTGCACATCAGGACAGGGCTTATGAATTTGTGGAGTGTCCTATGAGAGCTGCCAGTGGGACGAAACCCACACTGTCCGACATCAATCCAGCCAACATGATGCCTCCACCTAACCAGCAGCCTTCAGCTGATCAGCCCTTTCCCCTGTCAGTTGTAAGAGAGGAATCCACCATTCCCCGTGCTGGAGCTGAGCAGAACTGGGTTTATCCCTCAGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAAGATGACATAAACCAGAACGATATGGGGGACATCATCAAGATTCACAATCAGAATAATGAACAAGCCTGGCAAGAAATCCTGAGATGGGAGAAACTCCATTCAAAAGAATGTCCATGTGGACCTTCACTCTTAAGGTTTGGTGGTAAAGCAAAAGACTTCTCACCCAGAGCCAGATTTCGCTATTGGATGGGGCACGAGCTGCCATTTGATCGGCACGACTGGATTGTTGACCGTTGTGGAAAAGAGGTCAGATATGTGATCGACTACTATGATGGAGGCCTGGTGTCCAAACACACCATCCTCGATGTGCGTCCAGCCTTCGACTCTTTAGGAGCCGTTTGGGACCGTATGAAAGTGACCTGGTGGCGTTGGACCTCAACATAAACTTACTGGACATGAACTGTTGGATAAACAGGAACTATTATTTATAACCAAGTCTgtggaaggtttttttttttttgcatttggagTCAGAATGGCTTACTTATATTCCTGTGATGGATCCATTAGGTGAAAATTTTGAAACTATTTAATAAGAATGTGGCACTATGTGCTATTGCAAACTGCATCATGTAATAAACAGGAAATGCTGTTAATCTTA
>TCONS_00032035
GATGCAATGATGCAAAGCATCGTGGGCTCCGAGGCATGTGAACGACATTGACAGTAGAGGTGGGAGAAACTGATGAGAGACACTATGTCCAGTCCTACTGGCACCGTGAAGGCGGAGGGCATTATGGTGCCTGATGTTGGCGGCGCACCACCACAGGGCTGTCCAATGCATCGCAATGTTAATGAAAGTGTTCCTCCTCCAGAATGCCCAATGCATCAGGCATCTAGAGATCACACGAAGAAAGCTCCAGATGTACCTGCACATCAGGACAGGGCTTATGAATTTGTGGAGTGTCCTATGAGAGCTGCCAGTGGGACGAAACCCACACTGTCCGACATCAATCCAGCCAACATGATGCCTCCACCTAACCAGCAGCCTTCAGCTGATCAGCCCTTTCCCCTGTCAGTTGTAAGAGAGGAATCCACCATTCCCCGTGCTGGAGCTGAGCAGAACTGGGTTTATCCCTCAGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAAGATGACATAAACCAGAACGATATGGGGGACATCATCAAGATTCACAATCAGAATAATGAACAAGCCTGGCAAGAAATCCTGAGATGGGAGAAACTCCATTCAAAAGAATGTCCATGTGGACCTTCACTCTTAAGGTTTGGTGGTAAAGCAAAAGACTTCTCACCCAGAGCCAGATTTCGCTATTGGATGGGGCACGAGCTGCCATTTGATCGGCACGACTGGATTGTTGACCGTTGTGGAAAAGAGGTCAGATATGTGATCGACTACTATGATGGAGGCCTGGTGTCCAAACACACCATCCTCGATGTGCGTCCAGCCTTCGACTCTTTAGGAGCCGTTTGGGACCGTATGAAAGTGACCTGGTGGCGTTGGACCTCAACATAAACTTACTGGACATGAACTGTTGGATAAACAGGAACTATTATTTATAACCAAGTCTgtggaaggtttttttttttttgcatttggagTCAGAATGGCTTACTTATATTCCTGTGATGGATCCATTAGGTGAAAATTTTGAAACTATTTAATAAGAATGTGGCACTATGTGCTATTGCAAACTGCATCATGTAATAAACAGGAAATGCTGTTAATCTTA
>TCONS_00032036
gacatttttctgtaaaaactcaaaacacaaaTTCACAGAAAAGGTGtataatttaacattaaattgaaacatttgtttccaaaatattttaatagaaaacatgtcaggctaaataattaaaataaatcattgacttctgctgtcttcattagtttcaaaaacacaggttACTTTACGatttaaaatggtatttttgtatatcttttctgcataaaaacgtaaataaaaaatcttacacataccttaggaacggtatagcagaaaatgttggcggttttaaaaccttgacttttcaaaaccgctgtataccttgaaaacggttatcgtctcatgcctagTCATAGGccatgaaaaacacaaacaaaattatAAACCATTGACACAACACTGCATTTACTCACAGTGTGattattgcgaatgatcacattgcgatattagtgctgaaacgatatattgtgcagtcatAATTGTTGCAGTGAATGACAATTTAATGAGTGTCTTCTGTTAATCATGGTACAAATACacaatattcaaatataaatttttttgtgcaaaaataACAGGAGATATTGTTGTATATGGAAGGAGAAACATGCACTCTCtctgttttgatgcttgaaaatcATTCGTTTTCATCTTTGACCTCAATTTAACTGTGTATATGGGAGCAATAGTATGTGAAATCCAGTCACTCAAAACTTACAGTGTTATTTGATGTTTTGTGTCTAAGAAACTGATGAGAGACACTATGTCCAGTCCTACTGGCACCGTGAAGGCGGAGGGCATTATGGTGCCTGATGTTGGCGGCGCACCACCACAGGGCTGTCCAATGCATCGCAATGTTAATGAAAGTGTTCCTCCTCCAGAATGCCCAATGCATCAGGCATCTAGAGATCACACGAAGAAAGCTCCAGATGTACCTGCACATCAGGACAGGGCTTATGAATTTGTGGAGTGTCCTATGAGAGCTGCCAGTGGGACGAAACCCACACTGTCCGACATCAATCCAGCCAACATGATGCCTCCACCTAACCAGCAGCCTTCAGCTGATCAGCCCTTTCCCCTGTCAGTTGTAAGAGAGGAATCCACCATTCCCCGTGCTGGAGCTGAGCAGAACTGGGTTTATCCCTCAGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAAGATGACATAAACCAGAACGATATGGGGGACATCATCAAGATTCACAATCAGAATAATGAACAAGCCTGGCAAGAAATCCTGAGATGGGAGAAACTCCATTCAAAAGAATGTCCATGTGGACCTTCACTCTTAAGGTTTGGTGGTAAAGCAAAAGACTTCTCACCCAGAGCCAGATTTCGCTATTGGATGGGGCACGAGCTGCCATTTGATCGGCACGACTGGATTGTTGACCGTTGTGGAAAAGAGGTCAGATATGTGATCGACTACTATGATGGAGGCCTGGTGTCCAAACACACCATCCTCGATGTGCGTCCAGCCTTCGACTCTTTAGGAGCCGTTTGGGACCGTATGAAAGTGACCTGGTGGCGTTGGACCTCAACATAAACTTACTGGACATGAACTGTTGGATAAACAGGAACTATTATTTATAACCAAGTCTgtggaaggtttttttttttttgcatttggagTCAGAATGGCTTACTTATATTCCTGTGATGGATCCATTAGGTGAAAATTTTGAAACTATTTAATAAGAATGTGGCACTATGTGCTATTGCAAACTGCATCATGTAATAAACAGGAAATGCTGTTAATCTT
>TCONS_00032037
CGACATTGACAGTAGAGGTGGGAGAAACTGATGAGAGACACTATGTCCAGTCCTACTGGCACCGTGAAGGCGGAGGGCATTATGGTGCCTGATGTTGGCGGCGCACCACCACAGGGCTGTCCAATGCATCGCAATGTTAATGAAAGTGTTCCTCCTCCAGAATGCCCAATGCATCAGGCATCTAGAGATCACACGAAGAAAGCTCCAGATGTACCTGCACATCAGGACAGGGCTTATGAATTTGTGGAGTGTCCTATGAGAGCTGCCAGTGGGACGAAACCCACACTGTCCGACATCAATCCAGCCAACATGATGCCTCCACCTAACCAGCAGCCTTCAGCTGATCAGCCCTTTCCCCTGTCAGTTGTAAGAGAGGAATCCACCATTCCCCGTGCTGGAGCTGAGCAGAACTGGGTTTATCCCTCAGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGGTAACTTTTTGGGAAACTGCAGTCTGTAAATTAAGAATCTTTGTCGCCATCTCTGATTGAAACCTTTATTGCAGTTAAA

Function

symbol description
hccsa.1 Predicted to enable holocytochrome-c synthase activity. Predicted to be involved in cytochrome c-heme linkage. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 1 and microphthalmia. Orthologous to human HCCS (holocytochrome c synthase).

GO:

id name namespace
GO:0018063 cytochrome c-heme linkage biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0004408 holocytochrome-c synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-202 Predicted to enable holocytochrome-c synthase activity. Predicted to be involved in cytochrome c-heme linkage. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 1 and microphthalmia. Orthologous to human HCCS (holocytochrome c synthase).

Ensembl:

ensembl_id ENSDARG00000028131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032034 False 1086 mRNA 0.47 7 14998612 15033136
TCONS_00032035 False 1120 mRNA 0.47 7 14998612 15033163
TCONS_00032036 False 1783 mRNA 0.40 6 14998613 15031858
TCONS_00032037 True 540 processed_transcript 0.50 4 15028646 15033121

Neighbor

gene id symbol gene type direction distance location
XLOC_016250 CR788249.3 coding downstream 4122 14994393 ~ 14994490 (-)
XLOC_016249 hccsa.2 coding downstream 11330 14982383 ~ 14987282 (-)
XLOC_016248 NA coding downstream 34393 14962493 ~ 14964219 (-)
XLOC_016246 NA coding downstream 48986 14933798 ~ 14949626 (-)
XLOC_016247 CR788249.2 coding downstream 58609 14938586 ~ 14940003 (-)
XLOC_016252 si:dkey-10f21.4 coding upstream 1927 15035090 ~ 15041846 (-)
XLOC_016253 CR392002.1 coding upstream 68940 15102103 ~ 15107716 (-)
XLOC_016254 abcd3b coding upstream 76365 15109528 ~ 15125512 (-)
XLOC_016255 tecrl2b coding upstream 266925 15300088 ~ 15324837 (-)
XLOC_016256 olfm3b coding upstream 308526 15341689 ~ 15362923 (-)
XLOC_016243 NA non-coding downstream 167489 14737043 ~ 14831123 (-)
XLOC_016258 NA non-coding upstream 604056 15637219 ~ 15650590 (-)
XLOC_016263 NA non-coding upstream 1469617 16502780 ~ 16506795 (-)
XLOC_016264 CR377211.4 non-coding upstream 1475661 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 non-coding upstream 1479698 16512861 ~ 16519380 (-)

Expression


Co-expression Network