XLOC_016252 (si:dkey-10f21.4)


Basic Information

Item Value
gene id XLOC_016252
gene name si:dkey-10f21.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15035090 ~ 15041846 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032038
CACTTACTGACTGCACAAGGACAGTGGAGAGAAGAAGAGAAGGGATTTGTGTTTGCATCTCTATGCCAGTCTCTTTTGTTCCTGCCTGAGGTGAACTGAGCGGCTGTACCGATTGCTTACACCCTGTGTTTATCCTCGTGTCCTGCTGAGTTGATGAATGCAGTCCATGGCCAGTTCAACATGGGTCTTTTATAACAGAACGGGGCTCAGCAGGCATGGAGCCTCTCAGCCCGCAGGTGCTGGTGGTTGTAGCAGGAAGTTTCCTGAGCTTCCAGTGGCTCTTCCACAGAGTAAGCCCTTGGGTGTTTCAGCACCTCTGCGGAGGCTTTCTCAGGCTCAGCCCTACACAAAAGACAGAGTGGAACTCCAGGGCCGTCTCTACAGTGCACGCCTTGGTTGTGGGACTTTTCTGCCTTTACATATACATCTTTGACGAATCTATCCAAAAAGATCCTGTCTGGGGAGACGCCACACTGGTGAAACTAAATGTGGCCGTTACCTCAGGCTATCTCATGTCAGATCTCCTGCTCATGTTCACTTCATGGGAGTCAATTGGAGAGAAATACTTTGTCATTCATCATTTCGCTGCCCTCTATGCTTACTATTATGTGCTGAGTCAAGGGATTTTGCCTTACTTTGCAAATTTTCGGCTGCTATCAGAATTTTCCACCCCTTTTGTGAACCAGCGTTGGTTTTTTCACATGTTGGGCTACCACAAACTTTCCAAACCGAGTCTGCTTAATGGTGTCGCAATGGCGTTCACCTTCTTCTTGGTGAGGATCGCTGTCATTCCAGGCTACTACAGCCATATGTACTCGGTTTTCGGCACAGATGACTTCTACCGGTTACCTATTGGTGCCCGCTGTGCCTGGGTCATTTCCAGCGTGTCCTTGGATGTCATGAACATTATGTGGATGCGCAGAATCATCCGTGGATGTCTGAAAGTCCTTCGCTCTGCCTGGACACGACCAGCAGGAACTGACATGGAAACCAGAAAGAAAGACTGACATGGAGTAAAAGACAGAAACAACACATCAGCACACAAACCGTCCATCTTGTCCATCATGATGCTGGAGTGCAATTGTCATATGCGTTACTCCAGCTGCTGTACTTTTGAGTTTTTAAACCGACCAATCAACTGCGTGGAAAGTCATTGAGTTAATAATGACTTATATGATGTCATCTTCAAATCAGTCAGTCACAGTTTTTAAGAAATCAGGTGATTAGGAGGCATGAGACTGATCACAATGTACAATCAGGACATGAGTTGTGGTTGCACTATTTATTATTAAGCTGCTATTAAGATCAACCAACTTGCCTTTATGAATGCAATCAACAAAGCAACAGCACATCTTAAAGTTCACAAAGATGCACAGCGTGTGCCTGTAGACCATGATAGATGATTTTTGACTACAATAAGGATAGGGTTATGCAAACTGAGAAGTGTAATGGCACAGCAGAAATGTGGTTTAAGCATATATAGGTGAAAGATCCTGTAGGACAGGATATTGTACTCAAGAAACTATGCATGTCTACAATTACTGTATATACGGAGAAGACTATAGTATAATTAGGGAGTATTATGTCTGGAATACAAACATATCAGATGACACAGAGTTATATGTGTTTCTGAAAATCTATAACTTAATGGCAGAGCCGTGTGTAAGCTTTTGCTTGTATAGTACTTGCTATGTGTGGTTTGATGGTTGGTTTTGgaataatgacaataattacaGTATTTAAGCTTCAGTGGGGTAAGGCATTTCAGGTTATTTATCATTATATACTTCACTGTTATGGAATTAAGCAATGATATGAATGTTGACAAAGGTGTATATGAGCTATTGAATGAATTTCTACAAATACTGTGATGTTGAAACTGCTCATGTTAATGGAGTCGTCGTGTGTTTCTGTGGTGTGGCAATGTTTTAATCtacaataaaacaattttaattaaa
>TCONS_00032039
ACAGACGGAGCCATCTGAGACGTTTTTGGAGTCAGCTGACCTCTGGGTGGCTGTTGCAGCTGTGTCAGCACATATGCAAATGCGCCTGTGTACTGGGGAATTTGGCAGTGGAGAGGTACTGCGGCAGCTCAGGGCTCAGCAGGCATGGAGCCTCTCAGCCCGCAGGTGCTGGTGGTTGTAGCAGGAAGTTTCCTGAGCTTCCAGTGGCTCTTCCACAGAGTAAGCCCTTGGGTGTTTCAGCACCTCTGCGGAGGCTTTCTCAGGCTCAGCCCTACACAAAAGACAGAGTGGAACTCCAGGTGCCAGACTTTATCttctacactgtgaaaaatgttgGGTGCACACAACCAATTTGTGttcggacaacatgaaggaattaagttagcttattagtttttacaaatGGCCGTCTCTACAGTGCACGCCTTGGTTGTGGGACTTTTCTGCCTTTACATATACATCTTTGACGAATCTATCCAAAAAGATCCTGTCTGGGGAGACGCCACACTGGTGAAACTAAATGTGGCCGTTACCTCAGGCTATCTCATGTCAGATCTCCTGCTCATGTTCACTTCATGGGAGTCAATTGGAGAGAAATACTTTGTCATTCATCATTTCGCTGCCCTCTATGCTTACTATTATGTGCTGAGTCAAGGGATTTTGCCTTACTTTGCAAATTTTCGGCTGCTATCAGAATTTTCCACCCCTTTTGTGAACCAGCGTTGGTTTTTTCACATGTTGGGCTACCACAAACTTTCCAAACCGAGTCTGCTTAATGGTGTCGCAATGGCGTTCACCTTCTTCTTGGTGAGGATCGCTGTCATTCCAGGCTACTACAGCCATATGTACTCGGTTTTCGGCACAGATGACTTCTACCGGTTACCTATTGGTGCCCGCTGTGCCTGGGTCATTTCCAGCGTGTCCTTGGATGTCATGAACATTATGTGGATGCGCAGAATCATCCGTGGATGTCTGAAAGTCCTTCGCTCTGCCTGGACACGACCAGCAGGAACTGACATGGAAACCAGAAAGAAAGACTGACATGGAGTAAAAGACAGAAACAACACATCAGCACACAAACCGTCCATCTTGTCCATCATGATGCTGGAGTGCAATTGTCATATGCGTTACTCCAGCTGCTGTACTTTTGAGTTTTTAAACCGACCAATCAACTGCGTGGAAAGTCATTGAGTTAATAATGACTTATATGATGTCATCTTCAAATCAGTCAGTCACAGTTTTTAAGAAATCAGGTGATTAGGAGGCATGAGACTGATCACAATGTACAATCAGGACATGAGTTGTGGTTGCACTATTTATTATTAAGCTGCTATTAAGATCAACCAACTTGCCTTTATGAATGCAATCAACAAAGCAACAGCACATCTTAAAGTTCACAAAGATGCACAGCGTGTGCCTGTAGACCATGATAGATGATTTTTGACTACAATAAGGATAGGGTTATGCAAACTGAGAAGTGTAATGGCACAGCAGAAATGTGGTTTAAGCATATATAGGTGAAAGATCCTGTAGGACAGGATATTGTACTCAAGAAACTATGCATGTCTACAATTACTGTATATACGGAGAAGACTATAGTATAATTAGGGAGTATTATGTCTGGAATACAAACATATCAGATGACACAGAGTTATATGTGTTTCTGAAAATCTATAACTTAATGGCAGAGCCGTGTGTAAGCTTTTGCTTGTATAGTACTTGCTATGTGTGGTTTGATGGTTGGTTTTGgaataatgacaataattacaGTATTTAAGCTTCAGTGGGGTAAGGCATTTCAGGTTATTTATCATTATATACTTCACTGTTATGGAATTAAGCAATGATATGAATGTTGACAAAGGTGTATATGAGCTATTGAATGAATTTCTACAAATACTGTGATGTTGAAACTGCTCATGTTAATGGAGTCGTCGTGTGTTTCTGTGGTGTGGCAATGTTTTAATCtacaataaaacaattttaatt

Function

symbol description
si:dkey-10f21.4 Predicted to be involved in lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TLCD4 (TLC domain containing 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-350 Predicted to be involved in lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TLCD4 (TLC domain containing 4).

Ensembl:

ensembl_id ENSDARG00000057743

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032038 False 1958 mRNA 0.42 7 15035090 15041846
TCONS_00032039 True 1989 mRNA 0.42 7 15035093 15040345

Neighbor

gene id symbol gene type direction distance location
XLOC_016251 hccsa.1 coding downstream 1927 14998612 ~ 15033163 (-)
XLOC_016250 CR788249.3 coding downstream 40600 14994393 ~ 14994490 (-)
XLOC_016249 hccsa.2 coding downstream 47808 14982383 ~ 14987282 (-)
XLOC_016248 NA coding downstream 70871 14962493 ~ 14964219 (-)
XLOC_016246 NA coding downstream 85464 14933798 ~ 14949626 (-)
XLOC_016253 CR392002.1 coding upstream 60257 15102103 ~ 15107716 (-)
XLOC_016254 abcd3b coding upstream 67682 15109528 ~ 15125512 (-)
XLOC_016255 tecrl2b coding upstream 258242 15300088 ~ 15324837 (-)
XLOC_016256 olfm3b coding upstream 299843 15341689 ~ 15362923 (-)
XLOC_016257 col11a1b coding upstream 347347 15389193 ~ 15563194 (-)
XLOC_016247 CR788249.2 non-coding downstream 95087 14938586 ~ 14940003 (-)
XLOC_016244 NA non-coding downstream 245843 14788783 ~ 14789247 (-)
XLOC_016258 NA non-coding upstream 595373 15637219 ~ 15650590 (-)
XLOC_016263 NA non-coding upstream 1460934 16502780 ~ 16506795 (-)
XLOC_016264 CR377211.4 non-coding upstream 1466978 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 non-coding upstream 1471015 16512861 ~ 16519380 (-)

Expression


Co-expression Network