XLOC_016254 (abcd3b)


Basic Information

Item Value
gene id XLOC_016254
gene name abcd3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15109528 ~ 15125512 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032041
ACCTATAGAAACTCCCCGTTAACGgtcgtactgtaaaaaaaataacaggaAGAAATCTACCGCGTGGGTCCTTCGCTGCCCGCCGTCGCTTCCTGATTGGTTTCGTCTTGAACATGGCGGCTGTTAGTAAGTATCTGACAGCCGGCAATTCCTCCATCGCAGGTGCTTTGCTGTTCGCCGCTTATGTGTTAAAACAAAGACTGTCAACGGAAACCAATGGTTACAGAGAGAAGGGGTCATCAAAACCACTGCGGGACAATGAGaaggacagaaagacagacaaggCAGCAGTGGACAATGTTTTCTTCAGGCGGATTTGCCATATCTTGAAAATCCTGATGCCACAAGCTTTTTGCAAAGAGTCAGGATATTTGCTTCTGATCGCTGTCATGCTCGTTGCCAGAACATACTGTGATGTCTGGATGATACATAATGGGACTATGATTGAGAGTGCAATCATTGGACGTTCGACGACTACTTTCAAAAGATACTTGGTCAACTTTATCACAGTCATGCCTTTTATATCTCTAGTGAATAACTTCTTAAAGCTGGGAATCAATGAACTGAAGCTGTGTTTCAGAGTGAGACTGACCAATCACCTGTACAATGACTACTTGAAGGGGTTCACATACTATCAGATTGGCAACCTGGACAATCGCATCGCCAACCCAGACCAGCTGATAACCCAAGATGTGGAGAAGTTTTGTAACAGTGTGGTGGACCTCTATTCCAACGTCAGCAAGCCTCTACTCGACATCCTGATCTACATCTTCAAACTGAACACAGCTATTGGTAGTCTTGGTCCTGCTACTTTGCTTGGTTATCTGCTGTTGTCCGGTTTGCTCCTGACAAGGCTGCGCAGGCCGATCGGGAAGATGACCGTGACAGAGCAGAGGTATGAGGGCGAATACAGATACGTCAACTCTCGCCTCATCACTAACAGTGAGGAGATTGCATTTTACAACGGCAACTTGAGAGAAAAGCAAACTATTATTGGAACCTTCCAGAAactggtGGACCACTTGAGTCGCTTTATACACTTTCGGTTCTCAATGGGAGTTATGGACAGCATCATAGCCAAATATATAGCAATGGCAGTGGGTTATCTGGTCATCAGCCGGCCATTTTTGGACATTTCAAACCAACGGCACATTAACAGCACATATGCTGAGCGACTGGAAGACTACTACCAGAGTGGCCGAATGTTGATGAGCCTGGCCCAGGCTTTAGGAAGAATCGTCCTGGCAGGAAGAGAGATGACCAGACTCTCTGGGTTCACTGCACGAATCACAGAAATACAAGAAGTCCTGAAGGAGCTGAATTCGGGAAAATATGAGCGAACCATGGTGACACATCGAATTAAAGATACTGCAGTAGATAAAATCCCTCTTATCCCCGGGAGAGGTGAAATCATCATTGCAGACAATAAAATCAAGTTTGAACACATTCCTTTAGCGACACCCAATGGAGACATCCTGATCAGTGACTTGTCATTTGAGGTGTCATCTGGGACAAATGTGTTGGTCTGTGGCCCTAACGGATGTGGCAAGAGTTCCCTCTTCAGAGTCCTAGGAGAGTTGTGGCCTTTGTGTGGAGGAAAACTGACAAAACCAGAGCGAGGGAAGCTCTTCTATGTCCCTCAGAGGCCCTATATGACCTTGGGTTCCCTTAGAGATCAGGTGATCTATCCTGACACGCTTGAAGACCAAATGAAGAAAAGAACATCTGATCGGGTGCTGAAGGAGTACTTGGACAATGTCCAGCTGGGTCACATCCTGGAAAGAGAGGGCAGCTGGGAAAGCGTGCAGGACTGGATGGACGTCCTCAGTGGAGGAGAGAAGCAGAGGATGGCTATGGCTCGTCTGTTCTACCACAAGCCGCAGTTTGCCATTCTGGACGAGTGCACCAGTGCTGTGAGCGTGGATGTGGAGGACTTCATCTACAGCCACTGTCGGAAGgttGGCATCACACTGTTCACAGTCTCCCATAGAAAATCACTGTGGAAGCATCATGAGTATTACCTGCACATGGATGGAAGAGGAAACTACGAGTTTAAACCCATCACGAAGGAAACAGTGGAGTTCGGATCATAGTATTGACTTTAGGCCCTATTCATGAGCAAATCTTTGCGTAAATCATCTGTAAATTAAAAATAGCTGCTTTTGAAAAGATGTCCGAGGATGGTTTCATGCAGAAATTTGCTTGTGTAATTAATAAAGCCTAAATACAGAGCAAAGATCATTCCCAATCTTAAGAAAAACGTAATTCTTTGTATTATAATACAGCTTTTCTTCATCTGAGGGAAAGAATTGTCACCGTGGATAAGTATCTCTCAGGGAGAGGTTAGTTTTGCATtatctaaaaacatttttgtaaagagTAAATCTGG

Function

symbol description
abcd3b Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Predicted to be involved in fatty acid catabolic process; long-chain fatty acid import into peroxisome; and peroxisome organization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in Zellweger syndrome and congenital bile acid synthesis defect 5. Orthologous to human ABCD3 (ATP binding cassette subfamily D member 3).

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0042760 very long-chain fatty acid catabolic process biological_process
GO:0015910 long-chain fatty acid import into peroxisome biological_process
GO:0007031 peroxisome organization biological_process
GO:0055085 transmembrane transport biological_process
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0005324 long-chain fatty acid transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-29 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Predicted to be involved in fatty acid catabolic process; long-chain fatty acid import into peroxisome; and peroxisome organization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in Zellweger syndrome and congenital bile acid synthesis defect 5. Orthologous to human ABCD3 (ATP binding cassette subfamily D member 3).

Ensembl:

ensembl_id ENSDARG00000002947

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032041 True 2389 mRNA 0.45 23 15109528 15125512

Neighbor

gene id symbol gene type direction distance location
XLOC_016253 CR392002.1 coding downstream 1812 15102103 ~ 15107716 (-)
XLOC_016252 si:dkey-10f21.4 coding downstream 67682 15035090 ~ 15041846 (-)
XLOC_016251 hccsa.1 coding downstream 76365 14998612 ~ 15033163 (-)
XLOC_016250 CR788249.3 coding downstream 115038 14994393 ~ 14994490 (-)
XLOC_016249 hccsa.2 coding downstream 122246 14982383 ~ 14987282 (-)
XLOC_016255 tecrl2b coding upstream 174576 15300088 ~ 15324837 (-)
XLOC_016256 olfm3b coding upstream 216177 15341689 ~ 15362923 (-)
XLOC_016257 col11a1b coding upstream 263681 15389193 ~ 15563194 (-)
XLOC_016258 NA coding upstream 511707 15637219 ~ 15650590 (-)
XLOC_016259 vav3b coding upstream 867877 15993389 ~ 16159491 (-)
XLOC_016248 NA non-coding downstream 145309 14962493 ~ 14964219 (-)
XLOC_016246 NA non-coding downstream 159902 14933798 ~ 14949626 (-)
XLOC_016247 CR788249.2 non-coding downstream 169525 14938586 ~ 14940003 (-)
XLOC_016263 NA non-coding upstream 1377268 16502780 ~ 16506795 (-)
XLOC_016264 CR377211.4 non-coding upstream 1383312 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 non-coding upstream 1387349 16512861 ~ 16519380 (-)
XLOC_016267 CU929319.1 non-coding upstream 1490428 16615940 ~ 16616055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_05343381_05353920 NA coding CI01000004 null 5343381 ~ 5354231 (+)
bowfin (Amia calva) AMCG00005124 abcd3,LOC107739019,LOC107560648,LOC107657768 coding CM030140.1 CM030140.1 16046479 ~ 16057475 (-)