XLOC_016256 (olfm3b)


Basic Information

Item Value
gene id XLOC_016256
gene name olfm3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15341689 ~ 15362923 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032044
CGGCCGACGAGAAAACCAAGAAGATGGGTCTTTAAAGTGTCCATGGGTAATGAAGAACAGGTGCAAGTCGTTAGTAGTCTGATGAAGGTTCACTGGATTGGATGGAGGTGGTATGTGAGGGAGAACGTTGATTGGGTGAGCAGGAACAAGCTGGGGATGTGACATTATTACACACAATGGGATGCACAGCAACACGCTTGGAAAAGACCATCAGACCAAAGGAAGGCTGGCAGGTTTACAGTTCAGCACAGGATGCCGACGGTCGCTGCATCTGTACGGTTGTGGCACCAGAACAGAGCCTGTGCTCCAGAGATGCAAAGAGCAAGCAGCTCCGCCAGTTGCTGGAGAAGATTCAGAACATGTCGCAGTCAATCGAAGTGCTGAACCTGAGGACCCAGAGGGATTTCCAGTATGTCATGAAAATGGAGAGCCAGATGAAAGGACTCCGATCAAAGTTCAGACAAATCGAGTCCAACCGAAGAACATTATTGACTAAAAACTTTCAGGAGCTGAAGGGGAAGATGAATGAGTTGCAGCCGCTGATTCCGGTTTTGGAGCAGTATAAAACTGATGCCTCACTCATTTCCCAGTTCAAGGAGGAGCTCAGGAATCTCTCTGTGGTGCTGATGGCCATTCAGGAGGAGATCGGAGCGTATGATTATGAGGAGCTCCAGCAAAGGGTCCTTGGCTTGGAGGGAAGACTGAGGAACTGCATGAACAAACTTACATGTGGTAAGCTGATGAAAATCACTGGGCCTATCACTGTGAAGACATCAGGAACGAGGTTTGGAGCATGGATGACAGATCCTCAGGCTTCACCGAAGAATAACAAGGTTTGGTACATGGACAGCTATACCAACAACAAGATTGTCCGTGAGTACAAATCAGTCAGCGACTTCGTAGCAGGAGTCGAGTCCAAAACCTACAACCTCCCGTTCCACTGGGCAGGAACCAATCATGTGGTCTACAATGGCTCGCTGTACTACAACAAATACCAGAGCAACATCATTGTCAGATACAGCTTTGAAAGTGGCCGGGTCACGACTCAGAGAGCCCTGGAGTCTGCAGGATTCCACAATGTCTATCCATACACCTGGGGCGGATTCTCTGACATTGACCTGATGGCTGACGAGCTCGGTTTATGGGCCATCTATGCCACCAATCAGAATGCAGGGAATATAGTGATCAGCCGACTGGATCCTCAGACTATCCAGGTTCTGAACTCCTGGAACACAGAATACTCCAAACGCAATGCAGGCGAGTCCTTCATGATCTGCGGCACACTCTATATCACCAACTCACACCTGACCGGAGCCAAGGTTTACTACTCTTACTCCACCAAAACATCCACCTATGAGTACATGGACATCCCTATTCATAACCAGTACTTTCACATGTCCATGCTGGATTACAATGCCAGGGATCGTGCACTTTACGGATGGAACAACGGCCACCAGGTACTGTTCAATGTCACGCTTTTCCACATTATTAAAACTGACGATGAATCCTGAGAGACGTAGCCTGAGGTGAGAGGAAATCTATCTACAGTTACACTATTTAATTACTGTGGTATTGCTTTGAAATAATGGGATTTTTATGTTACAATCAAGAGATGAGTTTAGTTGGAGGTTCTCTGGGGGCCTCTGGAAATGTCATTTGTCAAACATTTGTGATTAAATTCAAAATCAGACTTGGATATTGACATTTATGAACTTTTAAGACTCTATTTAAATGTTGTTTGTGAAACTTTCAATGTGTGACAGTGATGTTCAGCTGTAATACTTGATTTAACAAAGAATGTAACTTAATACTTAATactaaaaactatatttaaaacTAGAAAAAATCATTACACACATACTGATCTGTCAGACTCCATCACTTTGTTTTGGTTTGTCAAATATTCAtggaattaaagggatagttaaatcAAAAGTGTAAATTTGCTGATCGTTTACTCCAACATGAAGGTGACCTTTTTCTTTGGGGGAATattaaagggccataaaacccccACTGTCTCACCAGGGTGTTCTTGTGTGAAAAGTCAGGCAAGTGGCTgggtccagctttgtttaggtgggagtggcgAAAGAGGAAAGGGTTTATATGAAAAGCAGAGTTTTATTACGTGcacatgctgattttcacagtGGCAACACAAACACTGACGCAGGGGAGATAGACAGGGATTTGGAGAGTAGCATTTACTCTTTGGATCTGAGAGCTGTGAAGAAGTTGAGGATTTTCAAtccataatattgtagttatAGTAACAttctgtaaacttagtaactaaattatTTTGACTAAGTTATGTCTTTTATAACTGAAAGAGTATTGCTGacaatactaactaactttgccatctgaataaacataaacaaagaatacACACTTGCCAAATCCATAGAAACGGGACAATTAACACAAACTGGAAttgcatcttttttttaaagaaaatgagtggcaaatccagatttcaccatttccagattttAAAAGCTCTTGGGTGAAAAATATTCCTTACAAACATACAAGCGAGCAGCTGTCACGATGAGGTATTACAAAAACAAGGAGTAGATCCAAATGCAgcataatatagtttaatatattaaGTAAACAAAGAAGATCCAAATAACAGGCAAGGTACAAAAACTGacaaaacaaacgcaagtgcaAAAACTAAAAGCACTGAATCAAACTAAATCTTAACAGGGATCCAAAAACATCGAGACGGTACtaaaagtgaacaaacaaaccgAACCTAACATGAGGAACTGGAGAGCAAAACAGGGGAGAGCAAAACAGGACAAAGCAAAACAGGACAGAGCAAAGCaaaatccaaaggcaaactaaacacaacatgACAAGGCTTATAAAAGACAGAACCAATTAGACAACAAggaacagctggaaacaaggagTGATCATGTGAGCAGGCATACAGGAAATGAAAACAACCAAAACAAGACTTAGTGCCCTTAAGAGTCCACAAGAGGGCACTGCAGCAGGTGTGACAGCAGCACTTTCATCGTGGGGAAATAGAAACAGAACCTTCGttgtggcacatttataaacaacccatgtctccgaacaactcttcttcttctacttgttttaattacggttggcaacacgtgatgtctctctgaacactgtaactggTAAAAGGAGTACATCATGCATATTAACTGGTTCGAAACAAGTCCTTCTGATGAATTAATAAAAAGATGTGCTGAATACTCAATGATGTCAATCATGCCAATCcccacgctggaatttacacaatgatctcattgCCTTTTCAAACTGGAAAAATGAATTTGCTTtaaacaacgcaaaaacaaccaattttaccttgttagctaaatatatgtgtcctaaaagtgtttttagcaacatggGATGTATATTTTgctgttaacatctcaaaaaatgcattttggtgtttca
>TCONS_00032045
GACCATCAGACCAAAGGAAGGCTGGCAGGTTTACAGTTCAGCACAGGATGCCGACGGTCGCTGCATCTGTACGGTTGTGGCACCAGAACAGAGCCTGTGCTCCAGAGATGCAAAGAGCAAGCAGCTCCGCCAGTTGCTGGAGAAGATTCAGAACATGTCGCAGTCAATCGAAGTGCTGAACCTGAGGACCCAGAGGGATTTCCAGTATGTCATGAAAATGGAGAGCCAGATGAAAGGACTCCGATCAAAGTTCAGACAAATCGAGTCCAACCGAAGAACATTATTGACTAAAAACTTTCAGGAGCTGAAGGGGAAGATGAATGAGTTGCAGCCGCTGATTCCGGTTTTGGAGCAGTATAAAACTGATGCCTCACTCATTTCCCAGTTCAAGGAGGAGCTCAGGAATCTCTCTGTGGTGCTGATGGCCATTCAGGAGGAGATCGGAGCGTATGATTATGAGGAGCTCCAGCAAAGGGTCCTTGGCTTGGAGGGAAGACTGAGGAACTGCATGAACAAACTTACATGTGGTAAGCTGATGAAAATCACTGGGCCTATCACTGTGAAGACATCAGGAACGAGGTTTGGAGCATGGATGACAGATCCTCAGGCTTCACCGAAGAATAACAAGGTTTGGTACATGGACAGCTATACCAACAACAAGATTGTCCGTGAGTACAAATCAGTCAGCGACTTCGTAGCAGGAGTCGAGTCCAAAACCTACAACCTCCCGTTCCACTGGGCAGGAACCAATCATGTGGTCTACAATGGCTCGCTGTACTACAACAAATACCAGAGCAACATCATTGTCAGATACAGCTTTGAAAGTGGCCGGGTCACGACTCAGAGAGCCCTGGAGTCTGCAGGATTCCACAATGTCTATCCATACACCTGGGGCGGATTCTCTGACATTGACCTGATGGCTGACGAGCTCGGTTTATGGGCCATCTATGCCACCAATCAGAATGCAGGGAATATAGTGATCAGCCGACTGGATCCTCAGACTATCCAGGTTCTGAACTCCTGGAACACAGAATACTCCAAACGCAATGCAGGCGAGTCCTTCATGATCTGCGGCACACTCTATATCACCAACTCACACCTGACCGGAGCCAAGGTTTACTACTCTTACTCCACCAAAACATCCACCTATGAGTACATGGACATCCCTATTCATAACCAGTACTTTCACATGTCCATGCTGGATTACAATGCCAGGGATCGTGCACTTTACGGATGGAACAACGGCCACCAGGTACTGTTCAATGTCACGCTTTTCCACATTATTAAAACTGACGATGAATCCTGAGAGACGTAGCCTGAGGTGAGAGGAAATCTATCTACAGTTACACTATTTAATTACTGTGGTATTGCTTTGAAATAATGGGATTTTTATGTTACAATCAAGAGATGAGTTTAGTTGGAGGTTCTCTGGGGGCCTCTGGAAATGTCATTTGTCAAACATTTGTGATTAAATTCAAAATCAGACTTGGATATTGACATTTATGAACTTTTAAGACTCTATTTAAATGTTGTTTGTGAAACTTTCAATGTGTGACAGTGATGTTCAGCTGTAATACTTGATTTAACAAAGAATGTAACTTAATACTTAATactaaaaactatatttaaaacTAGAAAAAATCATTACACACATACTGATCTGTCAGACTCCATCACTTTGTTTTGGTTTGTCAAATATTCAtggaattaaagggatagttaaatcAAAAGTGTAAATTTGCTGATCGTTTACTCCAACATGAAGGTGACCTTTTTCTTTGGGGGAATattaaagggccataaaaccccc

Function

symbol description
olfm3b Predicted to be located in extracellular region and synapse. Orthologous to human OLFM3 (olfactomedin 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-606 Predicted to be located in extracellular region and synapse. Orthologous to human OLFM3 (olfactomedin 3).

Ensembl:

ensembl_id ENSDARG00000039174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032044 False 3456 mRNA 0.41 6 15341689 15362923
TCONS_00032045 True 1810 mRNA 0.44 5 15343130 15349382

Neighbor

gene id symbol gene type direction distance location
XLOC_016255 tecrl2b coding downstream 16852 15300088 ~ 15324837 (-)
XLOC_016254 abcd3b coding downstream 216177 15109528 ~ 15125512 (-)
XLOC_016253 CR392002.1 coding downstream 233973 15102103 ~ 15107716 (-)
XLOC_016252 si:dkey-10f21.4 coding downstream 299843 15035090 ~ 15041846 (-)
XLOC_016251 hccsa.1 coding downstream 308526 14998612 ~ 15033163 (-)
XLOC_016257 col11a1b coding upstream 26270 15389193 ~ 15563194 (-)
XLOC_016258 NA coding upstream 274296 15637219 ~ 15650590 (-)
XLOC_016259 vav3b coding upstream 630466 15993389 ~ 16159491 (-)
XLOC_016260 arhgef4 coding upstream 835812 16198735 ~ 16359042 (-)
XLOC_016261 si:dkey-231j24.3 coding upstream 1002845 16365768 ~ 16380283 (-)
XLOC_016250 CR788249.3 non-coding downstream 347199 14994393 ~ 14994490 (-)
XLOC_016248 NA non-coding downstream 377470 14962493 ~ 14964219 (-)
XLOC_016246 NA non-coding downstream 392063 14933798 ~ 14949626 (-)
XLOC_016263 NA non-coding upstream 1139857 16502780 ~ 16506795 (-)
XLOC_016264 CR377211.4 non-coding upstream 1145901 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 non-coding upstream 1149938 16512861 ~ 16519380 (-)
XLOC_016267 CU929319.1 non-coding upstream 1253017 16615940 ~ 16616055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding CI01000004 null 5227614 ~ 5232052 (+)