XLOC_016257 (col11a1b)


Basic Information

Item Value
gene id XLOC_016257
gene name col11a1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15389193 ~ 15563194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032046
ACTTCCAAGTAACAGAAGAACGTGTTGCTTTGGAGTCTTTATCCAGTCCTGTAACACAGAATCAAGATTCAAAGATGAAAATCCATCCTAGGCAAGTCTCTGTGACTGTGACTCTCTCCTCCTGTAAACCGGTGTCCCTTCCCCATCATCCCGGTGTCGTATCCCTCAGAGCAGATACACCTTTGCTCTGAGGTTTCGGGGGAACGGTGTCAAACTTTTGAAGCACTCGTCAAAATAATGGGCGGATCTTTCCAAGACGGCCGTTTTTCCCTTGTTCATTTCTTTTTCCTCACGGGTCAGGTTTAGTCCACACGTCCAACCCTCCAAAAAGACTTGGGCTCTTCAGGGAACAAACGGGTTTCCCTTTTTTTCACAAGAGCCCGTTTACCTTCAGTCTGAGCGTCTGCTGGGCGGAGGGACTGTGGAGTTTCTTCACGACGTAAAACCAATTGATATTTTCGCTCATGGCAATGCAGAAATAATTGACAATAATCTGGATTGAGTAAAAAGGAACGATTTTGAAATTAAGACGCAGTTGAGGGGCTCCGGTCATGGATAAGGATAAGGAAAGGTGGTCCACGAGATGGAAAACGAAAAAGTGTCTCAGGAACTCCGTTTTAAGTGCAATCTTCAGTCTGACTTTTGTCCTACAGGCAACACAAGTGAGAGCAGCTGAACCCGTGGATGTGCTCAAGGTCTTAGACTTTAAAAGTTCACCTGAAGGAGTGAAGAAAACACCAGGCTTCTGCACCATCCGCAGAGGATCCAAACCAGATGTGGCCTACCGAGTGGACAAACGGGCCCAAATCAGCGCCCCAACCAAGCAGCTCTTCCCAGGAGGAGTATTCCCTGAGGATTTCTCCATCCTTATGACTATCAAGCCAAAAGCGGGAATACAGTCCTTCCTTTTGTCGGTGTACAATGAGCAGGGCATCCAGCAGCTGGGTGTGGAGGTGGGCCGCTCTCCGCTCTTCCTGTATGAGGATCAGCATGGGAAACCTGCTCCGGAGGATTACCCCCTTTTCCGTGCCATCAACCTCGCAGATGGAAAGTGGCACCGTGTGGCTATTAGCATCGAGAAGAAGACCGTCACAATGATTGTGGACTGTAAGAAGAAGATCTCTAAACCACTCAGCAGAAGTGACCATGCAATCATCAACACAGATGGCATCGCTATCTTTGGCACCAGAATCCTGGACGAAGAAGTTTTTGAGGGGGACATCCAGCAACTTCTTCTGGTGGCGGATCCTCGTGCAGCCTACGACTACTGTGAACACTACAGCCCTGACTGTGAAACCCCTCACCAGGACACTCCACAGGCCCAGGAACCCGAGGAagagTACAATCCCGAATACTCAGATGCATATGGGTTCTATGAATACACAGATGAAGTGACTGCCACTGAAAATCCCACTGACAACGTTCGTACTGACACCAAGCCCAGCACTGTCGACACTGGAGACTACTATGTTGAGCAGGATTACGGCACTGAAGCTCCTTCTGTTTCCAATCCAGCCAATGAGAATCCATCACCGAAAGAGGAAATAGTAGACGACTACATTACAGGCGTAGAACAAGTTGGCGTGGATGCCACCGCCGCCACCGAGGAGAGTGTGAAATATGTGGAGTCCAAAAGCACAAATGGAGGCGAAACCGAGGACTTTAAGGAATACGACCTTAACACATATGATGCAAAAGAGATAGACCCCAGCAATTATGATGATTCCTTCTATGACTACACTAATGGAGTAAAACCCACCGGATCAACCTATGAGGACGAGATTGGACCTGGACGACCTGCGGAAACTGAGGTCACTGAGAGCAATGTTGGTGGTGGTTATGGTGGAGAGAAGGGGCAGAAAGGTGAACCTGCAGTCATTGAGCCGGGGATGCTTATAGAGGGACCCCCAGGACCACCGGGGCCCGCCGGCCTCCCCGGCACTCCAGGCATACAAGGCTCCCCGGGCCTCCATGGAGATCCAGGTGAAAGAGGTCCTCCTGGTCGTCCAGGTTTGCCAGGCGGTGATGGAGCTCCCGGGCCTTCTGGCACCATCCTCATGTTGCCGTTCCGCGCCGGTGGAGAATCTTCAAAAGGCCCGGTTGTGTCGGCACAAGAAGCTCAGGCCCAAGCCATTCTCGCCCAGGCGCGGttgaCTATGAGGGGACCTCCAGGTCCAATGGGATTGACAGGACGCTCCGGCCCTGTGgGTGGTCCTGGTGCACCTGGTGCTAAAGGGGAAAGCGGAGATTCTGGCCCACAGGGACCAAGAGGACTTCAAGGCCCAACTGGTTCACCTGGAAAACCTGGCAAGAGGGGCCGAAATGGAGCAGATGGAGCCAGAGGAATTCCTGGAGAATCGGGAGCCAAGGGCGACCGAGGATTTGATGGCCTTCCTGGTCTACCTGGTGAAAAAGGACACAGAGGCGAGCAAGGTCCCATCGGCCTTCCAGGCTCTCCAGGAGAGGACGGACCGAGGGGTGAGGATGGTGAGATTGGACAGAGAGGAATGCCGGGAGAAAGTGGTCCAAGAGGTCTGCTGGGCCCCAGAGGATCTCCTGGTACTGCTGGACAGCGTGGACTGACTGGTTTGGATGGACCACCTGGCCCTAAAGGAAACATGGGTCCTCAAGGAGAGCCTGGACCTCCTGGTCAACAAGGAAACACCGGACCACATGGTCTGCCTGGTCCTCAAGGCCCCATCGGTCCACCTGGAGAGAAAgGTCCCGCAGGGAAACAGGGTCTCCATGGACTCGCTGGAGCTGATGGGCCTCCTGGTCATCCAGGAAAAGAGGGTCCTCCCGGGGACAAAGGAGCAGCTGGCCAGCCGGGTCCCCAGGGGTCCATTGGTTATCCCGGGCCTAGAGGTGTGAAGGGTGCTGAAGGCGTCCGAGGTCTGAAAGGAGGCAAAGGCGAGAAGGGTGAAGATGGTTTCCCTGGGTTCAAGGGAGACATGGGCCTCAAGGGTGACAAGGGAGAAGTCGGTGTGATCGGTCCCAGAGGAGAAGATGGACCTGAGGGGCCAAAGGGTAAATCAGGTCCAAGCGGAGAGGCCGGTCCAATGGGCACAGCAGGAGAGAAGGGAAAACTTGGTGTTCCAGGTTTGCCTGGCTATCCTGGAAGGCAAGGACCAAAGGGCTCTACTGGTTTCATCGGCTTCCCTGGAGCCAATGGTGAGAAAGGAGGACGGGGTATTGCTGGTAAAGCGGGTCCAAGAGGACAAAGAGGTCCAACGGGTCCCCGCGGTGGAAGAGGTGCCAGAGGTCCAACAGGAAAACCCGGAGCTAAGGGAACATCAGGAAATGATGGACCATCTGGTGGCCCAGGAGAGAGAGGACCCCAAGGACCTCAAGGACCTGTTGGATTGACTGGCCCAAAAGGCCCACCTGGGCCTCCTGGAAAGGACGGACTGCCCGGTCACCCTGGACAGCGAGGAGAGACTGGTTTCCAAGGCAAAACTGGACCTCCTGGACCTGGAGGTGTTGTTGGCCCACAGGGCTCTACGGGAGAAACTGGTCCTGTTGGAGAAAGAGGGCATCCTGGATCCCCAGGACCCCCTGGAGAGCAAGGCCTTCCTGGAGCTGCTGGCAAAGAAGGTGGAAAGGGTGATCCAGGTCCTCAGGGAATTTCTGGGAAACCTGGCCCTGCTGGATTGAAAGGGTTTCCAGGACAAAGGGGGCTTCCTGGCGCAGCGGGTCTGTCAGGTCTGAAGGGAGGCGAGGGTCCACAGGGTCCACAAGGCCCTAGCGGATCACCAGGAGAGAGAGGACCCGCTGGACCAGGAGGACCCATTGGCCAAACAGGACGCAACGGCCCTCAGGGACCCCCAGGACCTGCTGGAGAGAAGGGTGGTCCGGGTGAAAAAGGTCCTGCTGGTCCTGCCGGTCGGGATGGCATCCAGGGTCCAGTCGGACTCCCAGGCCCAGCCGGACCTCAAGGTCCGCCTGGAGAGGATGGTGACAAGGGAGAAGTTGGAGAACCTGGTCAGAAAGGAAGCAAAGGTGACAAGGGTGAACACGGTCCTCCAGGTCCAGCAGGTCCTCTGGGTGTTGTCGGAGCTCCAGGTCCTGCTGGAAGTGATGGAGAATCAGGACCCAGGGGTCAGCAGGGGATGTTTGGACAAAAGGGAGACGAGGGACCCCGAGGTTTTCCAGGTCTTCCTGGTCCCGTTGGATTGCAGGGTTTGCCGGGACCACCAGGCGAGAAGGGAGAGAATGGAGATGTTGGCCCAATGGGTCCACCCGGTCCTCCTGGCCCTAGAGGTCCTCAGGGTTCTAGTGGAGCAGATGGTGCTCCTGGTCCTCCTGGAGGTATTGGCGCAATGGGTGGAAATGGTGAAAAGGGTGAGACCGGAGAGGCAGGTAATCCAGGACCACCAGGAGAGCCGGGTACACTTGGACCCAAAGGTGAGCTTGGAGAGAAAGGAGAAGCTGGTCCTCCGGGAGCTGCAGGACCTGCCGGTGGAAGAGGACCTCCTGGAGATGACGGTCCCAAAGGAAACCCAggtCCTATCGGCTTCCCTGGAGATCCAGGTCCCCCTGGTGAGCCCGGAGTTGGTGGACTGGATGGACTTCCCGGAGACAAGGGAGATGATGGAGATGCCGGTCAGCCTGGTCCACCCGGTCCATCTGGTGAAGCTGGTTCTCCAGGACCCCCTGGAAAGAGAGGTCCCGCTGGCCCAGCTGGTACAGAAGGCAGACAAGGAGAGAAGGGTGCAAAGGGTGAAGCCGGTGCTGAGGGACCAGGGGGCAAAACTGGGCCTGTGGGCCCCCAGGGGCCTCCTGGAAAGTCTGGTGCTGAAGGCTTACGTGGCATTCCTGGGCCTGTGGGTGAACAGGGACTTCCTGGAGCTGCAGGCCAAGATGGACCTCCTGGACCATTGGGTCCTCCAGGTCTTCCTGGCTTGAAAGGTGACCCTGGTTCTAAGGGTGAAAAGGGTCATCCAGGTTTGATTGGTCTGATCGGTCCTCCTGGTGAGTCTGGAGAAAAAGGTGATCGAGGACTGCAAGGACCACAGGGTATTGGCGGAGGCAAGGGTGATGCTGGTCCCGCTGGTTCATCTGGTCCAGTCGGTCCCCCAGGTCCTCCTGGTATTCCTGGCACACAAGGACAGAAAGGATCCAAAGGATCAACCGGTCCAGCTGGACAGAAAGGAGAGCCTGGCTTGATCGGACCACCAGGTCCTCCGGGCCCCGCTGGTGACATCATCCAGTCTCTACCCCTCCAGATGAACAAAAAAGCGAAGAGATCACCTGATGTTCAGGATGATGAAGCAGCACCAATAGCAGATTATGGTATGGAGGGAATGGAGGATGTGTTTGGATCCCTCAACACTCTCAAACAGGACATTGAACGCATGAAGTTCCCATTGGGAACCCAGGATAATCCATCCAGAACCTGCAAAGACCTGCAGCTCAGCCAGCCAGACTTCCCTGATGgaTATTACTGGATTGATCCAAATATGGGATGCATAAGCGACGCCTTTAAAGTGCACTGTAACTTTACTGCCGGAGGAGAGACTTGCATTTACCCTGATAAGAAGTCCTCAGGGGTTAGAATATCAAACTGGCCAAAGGAGTCCCCAGGATCTTGGTTTAGTGAATTCAAGCGAGGAAAAATCTTGTCTTATGTGGATGTTGAGGAGAGCTCCATAAACTCAGTCCAGATGACGTTCCTCAAGCTGCTGAGCTCTTCTGCCCGGCAGAACTTCACATACATATGCCATCAGTCTGTGGCCTGGTACGACGCCAAGGCTGACAACTATGACAAGGCTCTGCGCTTCCTGGGCTCCAATGATGAGGAAATGTCCTATGACAACAACCCCTTCATCAAGGCTCTTTCAGACGGCTGCTCGctgaaGCAGGGCTATTCTAAATCTGTGATGGAAATCAACACCCCGCGCATCGAGCAGGTGCCCATCATCGATGTCATGTTGAATGACTTTGGGGAGTCCAGTCAAAGGTTTGGCTTTGAGGTTGGTCCCGTCTGCTTCCTTGGCTAAAGGATCCCCCCTTTTACTTTCATTCCAAAAGCCAAGGAGTGCGGCCCACCAAAAAGAACCCCAACCCGCTCCCCCCTCCTCGCGCCACACACACAAGCACCCAGATTGTGGAATATTCATCACCCCGGCGCAATTGGAACAGATCAGAGAGAGGACACGAACTGGTGGACAATGGCACACTTTCAGGAGAAGGAGGACCCATTCTTCTACATCTCTCCTCTGTAGGATCTTTTCACATTtccaaaattgtttgtttttttctctctactTGAAGCCTTGAGATGTTTTTATTTGTCCCATTACATGTTTAACCCCAGCACCATTCATGCTTGATTAACCCTCGCCCAATGCAAGTATTTCCCATTTGCCTTTCCAGTTTGGATCCTCCTCCAGGTGCTGCTCAGAGAAAGACAACCACAGTGGTGTGCTCTTGTTgtaaacacccaaacactcacgGTGCTATTGaacatgcatttttttgtttgtttgtttttttgggataaaactgtaattatttttttgtacaataCTGTTCTTTCTCAATTgcctttaaaggaatagttcaccccaaaaatgaacatttttatcatttaatgaCCCCCATTTGTTCTGAACATGCACTGAGAaacttttttggtaacactttagaacaggggtcactaatcctggtcctggagggccggtgtccctgcagggtttagcaccatcttgcctcaacacacctgcctggatgttttaagtatacctagtaagacaggaacaagtttggtgaccactgctttagaacAATAGTTTTAATGAATGCATCTACTAATATGAGCAATCAgtgatacatttattacagtatttattcatctttgttaacaatAGTTAATGTTGTTGAAGTTCTGtgtaactcatggtgcatttaactaatattaacactaactttagattttaataatgcattagtaatgttaaactatgattaataaatgccacGTCAGATTGTTCATACttaattttagtaaatacattaattaatggaCCCCAATTCTAAAGTGTTTGCAcaatttacaaataaacaaatattgttgcattttttattattttaagttgactcaaattaactttacaagtcatttttacttacaaaacatTAAACTTCGAGATAATGTTAGTATAACTTACAAAATAAAGTTAACttattaaaatgtacttatttcattcattcattcattttcttttcagcttagtcgctttattaatccagagtcgccacagcggattgaaccgccaacttatccagcacgtttttatgcaacagatgcccttccagccgcaacccatctccgggaaatgTACTTACTTCATTAAGTTGAAAAAATATTCAGCTGTTtctttctcaaaagaaaatattctcAAAACAATTCACGGTAGCCATTGTCTTCCGTAGTACTTTATTTATTACTATGGAAacattcttctgaatatcttcttatgtgttcaacagaagaaagaaactcgtgtAGTACATGTTCAGAACAACTGAAGGGTGAGAAAATGTGAATAGTTttccattttggggtgaactttgCCTTTAAACCTTGCATGTGTATCAAAACTGATTTGATGAAATATAAAgaatctttttcttttgtattttttgtttgtttatgtttgaaAGCAACAGATTTCTTTGCAAGATGTCACTCAATCAAGTGTTCCTGCcgactaaaaaataaaacaagcatttCAAACCATCTAAAATTTGTAATTATAAAGTATCCGGTTTGTAAATATTGAACCAATTTAGGACTTGGAGTTTCCTTTTTTTCTACCGAAGCGAAGTATTAACTGGATAAGCCGAATTTCCGCTATAGTTTTCATGTGGTAGCAAATCAGTGACTCTACAATGCTAAAGAAACTTGATGAAAAGTAACTTGATGTCAGATTGAATTTCTTGACCGTATACCTCAATTTCTTCAAACACGTATCCAACTCAACCCTGTACATACAGAGCCTTGGTTAGACAATCAAGTTTATATATTTGAGGCAGGgaattttcaaataataaaaacaggctatttgttaaatgtttgtttggttattttgTGATCAATTATCCCATTTAGCTATGAAAACCGGAGGTGCTCTTCGTCAATATTATATATGGATTCTGGACAGTATTGTATTAAAAGTGATAACTGTTTACTCTTTGTACGAATCATATTTGTGTGGTTCACTCAGTTTTTTCTGTGCTGTATGTGCAAAATCTTAATTTCTCTTCATATTTAAAGTTTCTGTGGTAAAATGTGTTCAGGTTGTGTGCTTCTGTAATGCTTTAGCTGTTTTTAAATGCTTGATTTTctttgtttggtttattttcaGTTCTGTCTGTGTTCCTGAAAATCCTTCAAATATATGACGATAGACTCGGAACTTACACATCTGTGTATCATACTTATAATTTATGTAAAACTTGGAATAAATGATTGATTACGTTTCAAGTA

Function

symbol description
col11a1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type XI trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranial cartilage; nervous system; neural crest; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1. Orthologous to human COL11A1 (collagen type XI alpha 1 chain).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005592 collagen type XI trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-607 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type XI trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranial cartilage; nervous system; neural crest; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1. Orthologous to human COL11A1 (collagen type XI alpha 1 chain).

Ensembl:

ensembl_id ENSDARG00000009014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032046 True 8491 mRNA 0.49 67 15389193 15563194

Neighbor

gene id symbol gene type direction distance location
XLOC_016256 olfm3b coding downstream 26270 15341689 ~ 15362923 (-)
XLOC_016255 tecrl2b coding downstream 64356 15300088 ~ 15324837 (-)
XLOC_016254 abcd3b coding downstream 263681 15109528 ~ 15125512 (-)
XLOC_016253 CR392002.1 coding downstream 281477 15102103 ~ 15107716 (-)
XLOC_016252 si:dkey-10f21.4 coding downstream 347347 15035090 ~ 15041846 (-)
XLOC_016258 NA coding upstream 74025 15637219 ~ 15650590 (-)
XLOC_016259 vav3b coding upstream 430195 15993389 ~ 16159491 (-)
XLOC_016260 arhgef4 coding upstream 635541 16198735 ~ 16359042 (-)
XLOC_016261 si:dkey-231j24.3 coding upstream 802574 16365768 ~ 16380283 (-)
XLOC_016262 atr coding upstream 821091 16384285 ~ 16449504 (-)
XLOC_016250 CR788249.3 non-coding downstream 394703 14994393 ~ 14994490 (-)
XLOC_016248 NA non-coding downstream 424974 14962493 ~ 14964219 (-)
XLOC_016246 NA non-coding downstream 439567 14933798 ~ 14949626 (-)
XLOC_016263 NA non-coding upstream 939586 16502780 ~ 16506795 (-)
XLOC_016264 CR377211.4 non-coding upstream 945630 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 non-coding upstream 949667 16512861 ~ 16519380 (-)
XLOC_016267 CU929319.1 non-coding upstream 1052746 16615940 ~ 16616055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_05154049_05203177 COL11A1B, COL11A1 coding CI01000004 null 5154049 ~ 5203177 (+)