XLOC_016258


Basic Information

Item Value
gene id XLOC_016258
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15637219 ~ 15650590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033794
cagtcgCTGGGACTGCTTTCTGAAAGATTGTCATCAGACCAGAGTTGCCATGACGACAAAGTGGGATGGTGTAGTGAATGTCACCTTTGCTGTCGAAGTGCTGAAGTCTGGAGCTCtggactgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacggggCGCGGAGGGTGGCCCCCTGGGCCCCTGCTGCCCTGACGGCCCTGCCACAGCTGCACTCAGGTGAAACCGACGTGGTGGCAGCAGCATGAAAGCTCCAAAAAACACAGCGGAAACGTTCCTCCAAGATCAAAGACTGAATGCTGGTTCTCAGTAGGCAAATAGCTTCTGTTCCTTCCTTAAGGGGTGCATTAGAAATAAATGAGCACAACTTATGCATTGACTGTATTATGTTATTCAATGATTCCTTTAGAATTTTTGAAGTTGATGAAGTTCAATACAGCATCCATTTCTATGACAATGCTGATTTGAAGTTTGTCTTCATTTGGAGAGAAGCATGCTGGGAAATGGAGGGCAAAGTCTTTTCAGGGATTTTTGGCTTTCTTTCGACTTATATTGTATGAATGCACACACATTACTGCACATCTCTGCGTTATGGAGTAAAAGCATTCtgataaaaatattgaaaagctAACCAGAAATTATGATCATTTaacaactttattattattattattattttattttattttttttttgattgattgattgtgtttGTCACAaagaatattacaaaaaataatccaAGCAAAATGCTCAGCGTTAGTATTTGGAAAATAACAcatttgttttagatttttgttttactgttaaaatcTTATCCAAGGATTACATCTCCAAATAAGacaaacatatataaaaagaaataaatatagataATTTCATGCATCATCAGTGGCAAGTGCAAACGTTTCtgaaatgatgatgatgttgttgttgttgttgaacaaaaaacaaagaatcattaaagcatcttcttttaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033794 True 993 lncRNA 0.38 2 15637219 15650590

Neighbor

gene id symbol gene type direction distance location
XLOC_016257 col11a1b coding downstream 74025 15389193 ~ 15563194 (-)
XLOC_016256 olfm3b coding downstream 274296 15341689 ~ 15362923 (-)
XLOC_016255 tecrl2b coding downstream 312382 15300088 ~ 15324837 (-)
XLOC_016254 abcd3b coding downstream 511707 15109528 ~ 15125512 (-)
XLOC_016253 CR392002.1 coding downstream 529503 15102103 ~ 15107716 (-)
XLOC_016259 vav3b coding upstream 342799 15993389 ~ 16159491 (-)
XLOC_016260 arhgef4 coding upstream 548145 16198735 ~ 16359042 (-)
XLOC_016261 si:dkey-231j24.3 coding upstream 715178 16365768 ~ 16380283 (-)
XLOC_016262 atr coding upstream 733695 16384285 ~ 16449504 (-)
XLOC_016263 NA coding upstream 852190 16502780 ~ 16506795 (-)
XLOC_016250 CR788249.3 non-coding downstream 642729 14994393 ~ 14994490 (-)
XLOC_016248 NA non-coding downstream 673000 14962493 ~ 14964219 (-)
XLOC_016246 NA non-coding downstream 687593 14933798 ~ 14949626 (-)
XLOC_016264 CR377211.4 non-coding upstream 858234 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 non-coding upstream 862271 16512861 ~ 16519380 (-)
XLOC_016267 CU929319.1 non-coding upstream 965350 16615940 ~ 16616055 (-)
XLOC_016269 BX640595.1 non-coding upstream 1293682 16944272 ~ 16944391 (-)
XLOC_016247 CR788249.2 non-coding downstream 697216 14938586 ~ 14940003 (-)

Expression


Co-expression Network