XLOC_016259 (vav3b)


Basic Information

Item Value
gene id XLOC_016259
gene name vav3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15993389 ~ 16159491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032047
CGAAGATCAGAGGCACGTCGCACGACTCATTTATTATAAACCGTTGCCATAGTAGAATACGTAACTCAGCTGATGGGGATTTGTAGTCCCGCTAGACCACGGATAAACCAAACTAGTACACACGAGCTACGGCTTTGTCAACTTCAAGCGCGAgctcagaaagaaaaaaagacggATGCCAAATATCACGCAAGGTGCGCGCTTCCCTTCGCGTGTTTCTACATCAAGCTTCCTTTGACGGAGTCTAATTTTCATAAAAgttgttcattttaatttaacacCTGCATTATGGAGTACTGGAGGCAGTGCAGTCTGTGGCTGATCAATTGTAAAGTTTTGCCCCGGAATCATCGGGTCACGGCGGACTCGGCGCAGGTTTTTGATTTGGCCCAAACTCTTCGGGATGGGGTGCTTCTGTGCCAGCTGCTGAACAATCTCAGACCAGACACCATTAACCTGAAGGAGATCAATCTCAGACCACAGATGTCACAGTTTCTCTGTCTGAAGAATATCCGTACATTCCTGTCTGCATGCTGTGAAGAATTTGGGATGAAGAAGAGTGACTTGTTTGAGGCCTTCGATCTCTTTGATGTCCGTGATTTTGGAAAGGTCATCGACACACTATCAAAACTCTCATATACGCCTGTTGCTCAACAGAGTGGCATCAGGTCGTTTCCCACAGAGGAAAGCACTGAAAATGAAGACATATACATCCATTTGGCAGATCTCATCGAcgaGGAGCTGGAAGAAGATGTTTATGACCCTGTGTATGGAGACATTGAAGGAGGAGAGGTGTATGAGGACCTGATGAGGACTGAAGCTGCTGTGTCTCAAGCGAAACAGGCCGAGGTGGACATCAGAAGCTGCTGTCTTTTAGAGATCAAACAGACAGAAGCCAAATACACAGAGACTCTAGAGACCATTGAGAAGtattttatgaTTCCACTGATGAAATTCATCCCTGCAACAGATATTGATAAGGTTTTCATCAATATACCGGACCTGGTTAAAGTTCACAAAGGTCTAATGGGTGAGATCCAAGACTGTGTTCAGAATAAAAATGCAGAGAATCTTCATCAGATCTTCATCACTTACAAAGACAGGCTTCTGCTTTATGGAAAATACTGCAGTCATGTAGAATCAGCCATTTCTCTCTTAGACTTCATCTGTAAGGAAAAAGAGGGCGTTCGACTGAAACTGGAGGAATGTTCAAAAAGAGCCAACAATGGGAAATTCACTTTGAGAGACTTGCTTGTGGTGCCAATGCAGCGAGTGCTGAAATACCCACTTCTGCTTCAGGAACTGGTCAAATATACAAATGACGGCCCCGAAAAGAGCAACCTACGAATAGCCCTTGATGCTATGAGAGACTTAGCACAATATGTAAATGAGGTGAAAAGAGATGTTGAGACCCTGAGGGAGATTGATCAGTATCAGAGATCCATTGAGAATTTGAATCAGTCTTTACTTTCTTATGGAAGACCGAAGGGTGACGGTGAAGTGCGTTTGGTGTCAAATTTGGACAAGCGCAGACAGGACAGACATATTTTTTTGTTCGACGCTGCTGTAATCATCTGCAAGAGGCGAGGGGACAACTATGAGATGAAGGAAGTGATCGACCTCAGCCATTTCAAGATCACCAATAATCTCGCTGATAAGGACTGCAGAAAGTGGTCCAGCGGGTTCTACCTCACCCACCAACAGGGACAGAGTGGATTTGAGTTCCTATTCAAGACGAAAGAGCTGAAGAAGAAATGGCTGGACCAGTTTGAGATGGCTATATCTAATATTCGACCAGAAAACGCCACGTTTAACTCTCACCACTTCAGAATGCACACTTTCGAGAGGGCCACCACCTGCAGCTCCTGTCGTATGCTACTCAGGGGGATTTTTAACCAAGGCTACCTTTGTCCTAAATGTGGAAACGGGGCTCATAAGGGCTGTCTGGGTAAACTGGGAGTCTGTGGAAGGACAGGTGCTGCAGTTCAGAAACCACAGAGAAAGACAACACCTAGAAAACAAGAAGACCCAGgtttgCCAAAAATGCTGGTCATCAGAGATTATTTTGGGGTTTCCAAACCTCAAGGCGGACAAGCGTTGAATGCTCAGATTGGTGATGTCATAGAGGTCGTCTACGCTGATCCTCACAGCTCCTGGTGGCAGGGCAAAATCCTGACGACGCAAGAGACCGGTTTCTTTCCAAGTGATGCCGTCAAGCCCTGCCCATGTGTGCCCAGAACAGTCGACTATTCCTCCCAACCTTGGTTCGCAGGCCCCATGGAGAGGCATCACGCAGAGTCTGAGCTCATGGAGAGAGAGAACAGCACATACCTGGTGCGATACCGGAGCCGTGAGAGCAGAGAGTACGCCATCAGCATCAAGTACAACAATGATGTGAAGCACCTTAAGGTCCTCACTAAGGAGGGCTGTTTCTACATTGCCGAAAGCAGGACGTTCAAGAATGTGTTGGGGCTTGTTGAATATTACAAACAGCACTCTCTGAAAGAGGGTTTCCGTACTCTGGACACTACTCTGCAGGTTCCCTTTAAGGAACTTGGTACAGGACTCCGTACTGCTGTTTTGACCCCAAGAGTGCTTGGTATTGCGCTGGCGCGATATGACTTCAGCTCGAGGGACACCCGTGAACTCTCACTGCAGGTGGGCGACCTGGTGAAGATCTATATCAAGTGTACCAATGGATGGTGGAAGGGTGAAGTCAATGGCcggGTTGGCTGGTTTCCTTCAACATATGTGGAAGAGGAGGAGTGAACGGCGCAGGAATTCATCCTCTAAACTGTGACCACAATGAACCAGAAGTCGGCTTTGGACAAGAATGGTATTAGCGACCATTGAACTCTTATATGAGCGAAGCCCCACAAACACCACAATTATCAGGCTCCTCTAATGGGATGTGATGGACTGCGGTTGATACCTGCAGCGTGACGCATCTGAGGTCTGTTTAATTAGTTATGAATGTCCCTCGCTGCTCCACATTCGCTCCAGAcgtctctttctctcactctctctcacccTGTCACCTCCTGAAATCTTCACACAGGGCCCGGGGCCTCCCTCTCTCCACCTGTTTAAAATTTAAACTCCATTTCTGTGCGAAGCCGGACCTCCCACAAACTCAGCAGTGGCATGCAGAGAGAAAAGCCCTGAGCTGGCCGTTTTTTTCTCCCCCTTCACTAGGCGACCTTTACACGGTGCTTTCAGCTCACCTTGTGCTATAATTGATGATTTCATTGGACCGTCTGACTCGACAGAGTTTGGCTGGGGTGAGATGGAGTGCTGTGCTGTCACGAAACCTTCCTCCTCTTCACAAATTCTTAGTACTAATTTTGaattacatgagacatatttttaataaaacaagcaaaaagtt
>TCONS_00032048
ATGGAGTACTGGAGGCAGTGCAGTCTGTGGCTGATCAATTGTAAAGTTTTGCCCCGGAATCATCGGGTCACGGCGGACTCGGCGCAGGTTTTTGATTTGGCCCAAACTCTTCGGGATGGGGTGCTTCTGTGCCAGCTGCTGAACAATCTCAGACCAGACACCATTAACCTGAAGGAGATCAATCTCAGACCACAGATGTCACAGTTTCTCTGTCTGAAGAATATCCGTACATTCCTGTCTGCATGCTGTGAAGAATTTGGGATGAAGAAGAGTGACTTGTTTGAGGCCTTCGATCTCTTTGATGTCCGTGATTTTGGAAAGGTCATCGACACACTATCAAAACTCTCATATACGCCTGTTGCTCAACAGAGTGGCATCAGGTCGTTTCCCACAGAGGAAAGCACTGAAAATGAAGACATATACATCCATTTGGCAGATCTCATCGAcgaGGAGCTGGAAGAAGATGTTTATGACCCTGTGTATGGAGACATTGAAGGAGGAGAGGTGTATGAGGACCTGATGAGGACTGAAGCTGCTAAACAGGCCGAGGTGGACATCAGAAGCTGCTGTCTTTTAGAGATCAAACAGACAGAAGCCAAATACACAGAGACTCTAGAGACCATTGAGAAGtattttatgaTTCCACTGATGAAATTCATCCCTGCAACAGATATTGATAAGGTTTTCATCAATATACCGGACCTGGTTAAAGTTCACAAAGGTCTAATGGGTGAGATCCAAGACTGTGTTCAGAATAAAAATGCAGAGAATCTTCATCAGATCTTCATCACTTACAAAGACAGGCTTCTGCTTTATGGAAAATACTGCAGTCATGTAGAATCAGCCATTTCTCTCTTAGACTTCATCTGTAAGGAAAAAGAGGGCGTTCGACTGAAACTGGAGGAATGTTCAAAAAGAGCCAACAATGGGAAATTCACTTTGAGAGACTTGCTTGTGGTGCCAATGCAGCGAGTGCTGAAATACCCACTTCTGCTTCAGGAACTGGTCAAATATACAAATGACGGCCCCGAAAAGAGCAACCTACGAATAGCCCTTGATGCTATGAGAGACTTAGCACAATATGTAAATGAGGTGAAAAGAGATGTTGAGACCCTGAGGGAGATTGATCAGTATCAGAGATCCATTGAGAATTTGAATCAGTCTTTACTTTCTTATGGAAGACCGAAGGGTGACGGTGAAGTGCGTTTGGTGTCAAATTTGGACAAGCGCAGACAGGACAGACATATTTTTTTGTTCGACGCTGCTGTAATCATCTGCAAGAGGCGAGGGGACAACTATGAGATGAAGGAAGTGATCGACCTCAGCCATTTCAAGATCACCAATAATCTCGCTGATAAGGACTGCAGAAAGTGGTCCAGCGGGTTCTACCTCACCCACCAACAGGGACAGAGTGGATTTGAGTTCCTATTCAAGACGAAAGAGCTGAAGAAGAAATGGCTGGACCAGTTTGAGATGGCTATATCTAATATTCGACCAGAAAACGCCACGTTTAACTCTCACCACTTCAGAATGCACACTTTCGAGAGGGCCACCACCTGCAGCTCCTGTCGTATGCTACTCAGGGGGATTTTTAACCAAGGCTACCTTTGTCCTAAATGTGGAAACGGGGCTCATAAGGGCTGTCTGGGTAAACTGGGAGTCTGTGGAAGGACAGGTGCTGCAGTTCAGAAACCACAGAGAAAGACAACACCTAGAAAACAAGAAGACCCAGgtttgCCAAAAATGCTGGTCATCAGAGATTATTTTGGGGTTTCCAAACCTCAAGGCGGACAAGCGTTGAATGCTCAGATTGGTGATGTCATAGAGGTCGTCTACGCTGATCCTCACAGCTCCTGGTGGCAGGGCAAAATCCTGACGACGCAAGAGACCGGTTTCTTTCCAAGTGATGCCGTCAAGCCCTGCCCATGTGTGCCCAGAACAGTCGACTATTCCTCCCAACCTTGGTTCGCAGGCCCCATGGAGAGGCATCACGCAGAGTCTGAGCTCATGGAGAGAGAGAACAGCACATACCTGGTGCGATACCGGAGCCGTGAGAGCAGAGAGTACGCCATCAGCATCAAGTACAACAATGATGTGAAGCACCTTAAGGTCCTCACTAAGGAGGGCTGTTTCTACATTGCCGAAAGCAGGACGTTCAAGAATGTGTTGGGGCTTGTTGAATATTACAAACAGCACTCTCTGAAAGAGGGTTTCCGTACTCTGGACACTACTCTGCAGGTTCCCTTTAAGGAACTTGGTACAGGACTCCGTACTGCTGTTTTGACCCCAAGAGTGCTTGGTATTGCGCTGGCGCGATATGACTTCAGCTCGAGGGACACCCGTGAACTCTCACTGCAGGTGGGCGACCTGGTGAAGATCTATATCAAGTGTACCAATGGATGGTGGAAGGGTGAAGTCAATGGCcggGTTGGCTGGTTTCCTTCAACATATGTGGAAGAGGAGGAGTGA
>TCONS_00032049
ATCTAATATTCGACCAGAAAACGCCACGTTTAACTCTCACCACTTCAGAATGCACACTTTCGAGAGGGCCACCACCTGCAGCTCCTGTCGTATGCTACTCAGGGGGATTTTTAACCAAGGCTACCTTTGTCCTAAATGTGGAAACGGGGCTCATAAGGGCTGTCTGGGTAAACTGGGAGTCTGTGGAAGGACAGGTGCTGCAGTTCAGAAACCACAGAGAAAGACAACACCTAGAAAACAAGAAGACCCAGgtttgCCAAAAATGCTGGTCATCAGAGATTATTTTGGGGTTTCCAAACCTCAAGGCGGACAAGCGTTGAATGCTCAGATTGGTGATGTCATAGAGGTCGTCTACGCTGATCCTCACAGCTCCTGGTGGCAGGGCAAAATCCTGACGACGCAAGAGACCGGTTTCTTTCCAAGTGATGCCGTCAAGCCCTGCCCATGTGTGCCCAGAACAGTCGACTATTCCTCCCAACCTTGGTTCGCAGGCCCCATGGAGAGGCATCACGCAGAGTCTGAGCTCATGGAGAGAGAGAACAGCACATACCTGGTGCGATACCGGAGCCGTGAGAGCAGAGAGTACGCCATCAGCATCAAGTACAACAATGATGTGAAGCACCTTAAGGTCCTCACTAAGGAGGGCTGTTTCTACATTGCCGAAAGCAGGACGTTCAAGAATGTGTTGGAAACTAGAGCATTTGCTGATCTGCATATTTCT
>TCONS_00032050
cattactgtcgcaatggcaagcagctcctttgttttttatttatttaataaagaagCTGAGATAcgacctgaaagacgacaatacaacacctactatcacaatcatcagcacttttaatagtttatttaacagacttataatatgctgttgttctattggagttttcaacCCAAAATGGCTGCCgcaccctctagtggctgtttcccaaattacactagagtgtcacctcttggtcatTTTAAGCTCTTTGATTAAACCGGACACATCGTGACGTACTgtatggtatttaaaaaaatctcaaaaaacatAACATTTGTAATACACTGTGTATTTCTCATTCCTAGGTGCCCAGAACAGTCGACTATTCCTCCCAACCTTGGTTCGCAGGCCCCATGGAGAGGCATCACGCAGAGTCTGAGCTCATGGAGAGAGAGAACAGCACATACCTGGTGCGATACCGGAGCCGTGAGAGCAGAGAGTACGCCATCAGCATCAAGTACAACAATGATGTGAAGCACCTTAAGGTCCTCACTA

Function

symbol description
vav3b Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human VAV3 (vav guanine nucleotide exchange factor 3).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-251 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human VAV3 (vav guanine nucleotide exchange factor 3).

Ensembl:

ensembl_id ENSDARG00000075962

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032047 False 3388 mRNA 0.47 27 15993389 16159491
TCONS_00032048 False 2469 mRNA 0.47 27 15994008 16159203
TCONS_00032049 False 721 mRNA 0.50 10 16021436 16063489
TCONS_00032050 True 535 lncRNA 0.42 3 16021657 16027339

Neighbor

gene id symbol gene type direction distance location
XLOC_016258 NA coding downstream 342799 15637219 ~ 15650590 (-)
XLOC_016257 col11a1b coding downstream 430195 15389193 ~ 15563194 (-)
XLOC_016256 olfm3b coding downstream 630466 15341689 ~ 15362923 (-)
XLOC_016255 tecrl2b coding downstream 668552 15300088 ~ 15324837 (-)
XLOC_016254 abcd3b coding downstream 867877 15109528 ~ 15125512 (-)
XLOC_016260 arhgef4 coding upstream 39244 16198735 ~ 16359042 (-)
XLOC_016261 si:dkey-231j24.3 coding upstream 206277 16365768 ~ 16380283 (-)
XLOC_016262 atr coding upstream 224794 16384285 ~ 16449504 (-)
XLOC_016263 NA coding upstream 343289 16502780 ~ 16506795 (-)
XLOC_016264 CR377211.4 coding upstream 349333 16508824 ~ 16512422 (-)
XLOC_016253 CR392002.1 non-coding downstream 885673 15102103 ~ 15107716 (-)
XLOC_016250 CR788249.3 non-coding downstream 998899 14994393 ~ 14994490 (-)
XLOC_016248 NA non-coding downstream 1029170 14962493 ~ 14964219 (-)
XLOC_016246 NA non-coding downstream 1043763 14933798 ~ 14949626 (-)
XLOC_016265 CR377211.2 non-coding upstream 353370 16512861 ~ 16519380 (-)
XLOC_016267 CU929319.1 non-coding upstream 456449 16615940 ~ 16616055 (-)
XLOC_016269 BX640595.1 non-coding upstream 784781 16944272 ~ 16944391 (-)

Expression


Co-expression Network